YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374168, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	755 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374168, gi|....

Description	E-value	Query Range	Subject Range
gi\|53804153, gi\|... - gi\|53804153\|ref\|YP_114227.1\| ATP-dependent Clp protease, ATP-binding subunit ClpA [Methylococcus cap...	519.0	[0..1]	[753..1]
gi\|25289927 - pir\|\|AB3354 ATP-dependent clp proteinase ATP-binding chain clpa BMEI0816 [imported] - Brucella melit... gi\|225627637, gi... - gi\|225627637\|ref\|ZP_03785674.1\| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella ceti s... gi\|225852666, gi... - gi\|225852666\|ref\|YP_002732899.1\| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella melit... gi\|17987099, gi\|... - gi\|17987099\|ref\|NP_539733.1\| ATP-dependent Clp protease ATP-binding subunit CLPA [Brucella melitensi... gi\|9542862 - gi\|9542862\|emb\|CAC00480.1\| ClpA protein [Brucella suis] gi\|254693876 - gi\|254693876\|ref\|ZP_05155704.1\| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella abortu... gi\|254697527 - gi\|254697527\|ref\|ZP_05159355.1\| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella abortu... gi\|237815588, gi... - gi\|237815588\|ref\|ZP_04594585.1\| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella abortu... gi\|82700007 - gi\|82700007\|ref\|YP_414581.1\| chaperonin ClpA/B [Brucella melitensis biovar Abortus 2308] gi\|254689392 - gi\|254689392\|ref\|ZP_05152646.1\| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella abortu... gi\|254730422 - gi\|254730422\|ref\|ZP_05189000.1\| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella abortu... gi\|254706650 - gi\|254706650\|ref\|ZP_05168478.1\| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella pinnip... gi\|254710243 - gi\|254710243\|ref\|ZP_05172054.1\| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella pinnip... gi\|189019892, gi... - gi\|189024320\|ref\|YP_001935088.1\| ATP-dependent CLP protease ATP-binding subunit CLPA [Brucella abort... gi\|161619120, gi... - gi\|161619120\|ref\|YP_001593007.1\| ATP-dependent Clp protease ATP-binding subunit clpA [Brucella canis... gi\|62196214, gi\|... - gi\|62290082\|ref\|YP_221875.1\| ClpA, ATP-dependent Clp protease, ATP-binding subunit ClpA [Brucella ab... gi\|82616108 - gi\|82616108\|emb\|CAJ11147.1\| Chaperonin clpA/B:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA A... gi\|23502047, gi\|... - gi\|23502047\|ref\|NP_698174.1\| ATP-dependent Clp protease, ATP-binding subunit ClpA [Brucella suis 133...	515.0	[0..2]	[754..4]
gi\|89350809, gi\|... - gi\|89360077\|ref\|ZP_01197896.1\| ATPas [Xanthobacter autotrophicus Py2], gi\|89350809\|gb\|EAS16091.1\| AT...	515.0	[0..2]	[754..4]
gi\|34499124, gi\|... - gi\|34499124\|ref\|NP_903339.1\| ATP-dependent Clp protease, ATP-binding subunit [Chromobacterium violac...	513.0	[0..1]	[754..1]
gi\|113884672, gi... - gi\|113969988\|ref\|YP_733781.1\| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella sp. M...	512.0	[0..1]	[755..1]
gi\|82945063, gi\|... - gi\|83310222\|ref\|YP_420486.1\| ATPase with chaperone activity, ATP-binding subunit [Magnetospirillum m...	512.0	[0..1]	[746..1]
gi\|114047223, gi... - gi\|114047223\|ref\|YP_737773.1\| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella sp. M...	512.0	[0..1]	[755..1]
gi\|88921905, gi\|... - gi\|88939359\|ref\|ZP_01144808.1\| ATPase [Acidiphilium cryptum JF-5], gi\|88921905\|gb\|EAR41007.1\| ATPase...	511.0	[0..1]	[752..1]
gi\|76809374, gi\|... - gi\|76809374\|ref\|YP_332525.1\| ATP-dependent Clp protease ATP-binding subunit clpA [Burkholderia pseud...	510.0	[0..1]	[753..119]
gi\|71735793, gi\|... - gi\|71735793\|ref\|YP_275267.1\| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pseudomonas syrin...	509.0	[0..1]	[752..1]

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Predicted Domain #1

Region A:
Residues: [1-755]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNKDLEVTL NLAFQQAREA RHEYMTVEHL LLALIDNPAA QEALIACGAN LDKLRDEVAS  60
   61 FIQQTTPIIA DMDDDKETQP TLGFQRVLQR AVFHVQSSGR NEVTGANVLV AIFSEQESQA 120
  121 VYLLRRSDIS RLDVVNFISH GFSKNEDSDA HQDQERSEEQ AEASEERSML SQFATNLNQL 180
  181 AKQGVIDPLI GRDQEIERAI QTLCRRRKNN PLLVGEAGVG KTAIAEGLAY RIVNHQVPEV 240
  241 MAQATVYSLD LGSLLAGTKY RGDFEKRFKN LLKELSADKH AILFIDEIHT IIGAGAASGG 300
  301 VMDASNLLKP LLSSGNLRCM GSTTFQEYQS IFEKDRALAR RFQKVDINEP SVAETTKILM 360
  361 GLKSKYEEYH GVRYTQAAIN SAAVLSAKHI NDRHLPDKAI DVIDEAGARM AMLPQSKRKK 420
  421 TIGQAEIETI VAKIARIPEK SVSATDKDLL RNLERNLKMV VFGQDKAIET LSSAIRLSRS 480
  481 GLGTDKKPVG SFLFAGPTGV GKTEVTNQLA NCLGMKLVRF DMSEYMESHT VSRLIGAPPG 540
  541 YVGYDQGGLL TDAVIKNPHC VVLLDEIEKA HPDVYNLLLQ VMDHGTLTDN NGRKADFRHV 600
  601 TLVMTTNAGV QETIRKSIGF TQQDHTQDAL SEINRVFSPE FRNRLDSIIW FNHLDMTIIA 660
  661 KVVDKFLVEL QAQLDAKHVV LEVSDEARTL LAQKGYDKSM GARPMARVVT ELIKRPLADE 720
  721 LLFGELEHGG IAHVDAKDGE IVIHAERNEK TTSKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	141.0
Match:	1ksfX
Description:	N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone; ClpA, an Hsp100 chaperone, AAA+ modules
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	2.55157966585974	bayes_pls_golite062009
binding	1.41264401383678	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
purine nucleotide binding	0.569910969126728	bayes_pls_golite062009
purine ribonucleotide binding	0.568840867400671	bayes_pls_golite062009
ribonucleotide binding	0.568779924702229	bayes_pls_golite062009
nucleotide binding	0.564275755355315	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.546796591575762	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.543610140926125	bayes_pls_golite062009
pyrophosphatase activity	0.540750418412449	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.517457589081898	bayes_pls_golite062009
ATP binding	0.1860481660648	bayes_pls_golite062009
adenyl ribonucleotide binding	0.152859582615242	bayes_pls_golite062009
adenyl nucleotide binding	0.138615225841109	bayes_pls_golite062009
nucleic acid binding	0.030747546048349	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: