YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347931, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	641 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347931, gi|....

Description	E-value	Query Range	Subject Range
gi\|113970448, gi... - gi\|82495716\|ref\|ZP_00881290.1\| soluble lytic murein transglycosylase, putative [Shewanella sp. MR-4]...	450.0	[0..1]	[641..1]
gi\|114047359, gi... - gi\|114047359\|ref\|YP_737909.1\| lytic transglycosylase, catalytic [Shewanella sp. MR-7], gi\|113888801\|...	449.0	[0..1]	[641..1]
gi\|62182997, gi\|... - gi\|62182997\|ref\|YP_219414.1\| lytic murein transglycosylase, soluble [Salmonella enterica subsp. ente... gi\|224470928, gi... - gi\|224586400\|ref\|YP_002640199.1\| lytic murein transglycosylase [Salmonella enterica subsp. enterica ...	446.0	[0..4]	[641..18]
gi\|16767823, gi\|... - gi\|16767823\|ref\|NP_463438.1\| soluble lytic murein transglycosylase [Salmonella typhimurium LT2], gi\|...	445.0	[0..4]	[641..18]
gi\|191173198, gi... - gi\|75239544\|ref\|ZP_00723514.1\| COG0741: Soluble lytic murein transglycosylase and related regulatory... gi\|170517592, gi... - gi\|170679874\|ref\|YP_001746850.1\| soluble lytic murein transglycosylase [Escherichia coli SMS-3-5], g... gi\|26111718, gi\|... - gi\|26251285\|ref\|NP_757325.1\| lytic murein transglycosylase [Escherichia coli CFT073], gi\|26111718\|gb... gi\|227885116, gi... - gi\|227885116\|ref\|ZP_04002921.1\| lytic murein transglycosylase [Escherichia coli 83972], gi\|227837945... gi\|218368394, gi... - gi\|218561625\|ref\|YP_002394538.1\| lytic murein transglycosylase [Escherichia coli S88], gi\|218368394\|... gi\|117626752, gi... - gi\|117626752\|ref\|YP_860075.1\| lytic murein transglycosylase [Escherichia coli APEC O1], gi\|115515876... gi\|91075684, gi\|... - gi\|91214110\|ref\|YP_544096.1\| lytic murein transglycosylase [Escherichia coli UTI89], gi\|91075684\|gb\|... gi\|110346423, gi... - gi\|110644831\|ref\|YP_672561.1\| lytic murein transglycosylase [Escherichia coli 536], gi\|110346423\|gb\|...	443.0	[0..5]	[641..7]
gi\|74314826, gi\|... - gi\|74314826\|ref\|YP_313245.1\| soluble lytic murein transglycosylase [Shigella sonnei Ss046], gi\|73858...	442.0	[0..5]	[641..16]
gi\|81243792, gi\|... - gi\|82779644\|ref\|YP_405993.1\| soluble lytic murein transglycosylase [Shigella dysenteriae Sd197], gi\|...	441.0	[0..5]	[641..16]
gi\|110808180, gi... - gi\|110808180\|ref\|YP_691700.1\| lytic murein transglycosylase [Shigella flexneri 5 str. 8401], gi\|1106...	441.0	[0..5]	[641..7]
gi\|54307844, gi\|... - gi\|54307844\|ref\|YP_128864.1\| soluble lytic murein transglycosylase [Photobacterium profundum SS9], g...	441.0	[0..20]	[641..22]
SLT_SALTY - Soluble lytic murein transglycosylase OS=Salmonella typhimurium GN=slt PE=3 SV=2 gi\|197263049, gi... - gi\|197263049\|ref\|ZP_03163123.1\| solublelytic murein transglycosylase [Salmonella enterica subsp. ent... gi\|205331438, gi... - gi\|205331438\|gb\|EDZ18202.1\| soluble lytic murein transglycosylase [Salmonella enterica subsp. enteri... SLT_SALTY - Soluble lytic murein transglycosylase OS=Salmonella typhimurium GN=slt PE=3 SV=2 SLT_SALTY - Soluble lytic murein transglycosylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720... lcl\|NC_016856.1_... - [gene=slt] [protein=lytic murein transglycosylase] [protein_id=YP_005240927.1] [location=4851868..48...	440.0	[0..4]	[641..6]

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Predicted Domain #1

Region A:
Residues: [1-641]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCNPLTKMVL SSAIIIAGAF NASAAFALTS TQKTFIEAEK ALKKQDYATY KPLRAKLGEY  60
   61 PLAIYLDHDM DIGKLNDLRG NDAKLLIDKY QTTPMYQRLR LKYLLNAGGQ KRWNDFLSLA 120
  121 QDAPTDVRLQ CYFYEAKLAK GEIQTAYTAA QSLWIYGDSR PKECDSLFNT WTKAGKRTQE 180
  181 VIWARMLLSF DEGQTSLLSF LSQKITVHSA EAKRLVAVFK DPNSLRHTEK FKDKNPIVGD 240
  241 IVAAGLKRLA RKDLDQAIDL YSHYQKAKRF SPAQDQQLQK YLVRRVLIEQ DDNFKDWADN 300
  301 LLPEMKSDDM FERRLRWAIR EQDSTHIARY LDLLSPETQS KERWQYWLYR TNAQHAPESA 360
  361 TKALAAVSNE RGFYGFAASQ LLNKPVSLNK SPEPVVDVNS PKIEDDLGFV RVQELMALDR 420
  421 YFDARYEWVA LLKRSNNDMR ARYGRYAHDQ GWYDFGVEAS IQGKLWDDIP LRFPVAHQSG 480
  481 FEHASKKHKV NIDEIRAISR RESAFYLYAT SGVGARGLMQ IMPATAKATA KKHGAKYNDP 540
  541 KDLYSAELNL NLGSAYYAQL LKEFNQNRVL ATAAYNAGPS RVRRWLSESN GQLDAMSFIE 600
  601 SIPFTETREY VQAVLSYRLI YEAQKQKPLP LFNEAELKFH Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	119.0
Match:	1qsaA
Description:	70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, hydrolyzing O-glycosyl compounds	2.78686842118168	bayes_pls_golite062009
hydrolase activity	2.57229987516572	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	2.44447583797891	bayes_pls_golite062009
penicillin binding	2.44231807818811	bayes_pls_golite062009
drug binding	1.87994419885538	bayes_pls_golite062009
lysozyme activity	1.69912171793125	bayes_pls_golite062009
catalytic activity	1.5828442141425	bayes_pls_golite062009
binding	0.477631821592575	bayes_pls_golite062009
chitinase activity	0.46668092246662	bayes_pls_golite062009
peptidase activity	0.365510090447337	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.129651578108655	bayes_pls_golite062009
protein binding	0.054632843930027	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: