YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347858, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347858, gi|....

Description	E-value	Query Range	Subject Range
gi\|145565114, gi... - gi\|77814766\|ref\|ZP_00814020.1\| NUDIX hydrolase [Shewanella putrefaciens CN-32], gi\|77810286\|gb\|EAO94...	215.0	[0..1]	[237..1]
gi\|82721656, gi\|... - gi\|82740988\|ref\|ZP_00903719.1\| MutT/nudix family protein [Shewanella sp. W3-18-1], gi\|82721656\|gb\|EA...	213.0	[0..1]	[237..1]
gi\|106892416, gi... - gi\|148654328\|ref\|YP_001274533.1\| NUDIX hydrolase [Roseiflexus sp. RS-1], gi\|148566438\|gb\|ABQ88583.1\|...	190.0	[0..2]	[225..4]
gi\|113942320, gi... - gi\|113942320\|ref\|ZP_01428055.1\| NUDIX hydrolase [Herpetosiphon aurantiacus ATCC 23779], gi\|113896038...	185.0	[0..8]	[225..1]
gi\|49530143, gi\|... - gi\|50084167\|ref\|YP_045677.1\| putative MutT/nudix family protein [Acinetobacter sp. ADP1], gi\|4953014...	185.0	[0..2]	[222..9]
gi\|25532299 - pir\|\|AE2116 hypothetical protein alr2484 [imported] - Nostoc sp. (strain PCC 7120) gi\|17229976, gi\|... - gi\|17229976\|ref\|NP_486524.1\| hypothetical protein alr2484 [Nostoc sp. PCC 7120], gi\|17131576\|dbj\|BAB...	173.0	[0..2]	[234..5]
gi\|83649601, gi\|... - gi\|83649601\|ref\|YP_438036.1\| ADP-ribose pyrophosphatase [Hahella chejuensis KCTC 2396], gi\|83637644\|...	173.0	[0..2]	[236..6]
gi\|53764374, gi\|... - gi\|75906641\|ref\|YP_320937.1\| NUDIX hydrolase [Anabaena variabilis ATCC 29413], gi\|75700366\|gb\|ABA200...	172.0	[0..2]	[234..5]
gi\|30314626 - gi\|30314626\|dbj\|BAC76070.1\| Nudix hydrolase [Synechococcus sp. PCC 7002]	172.0	[0..14]	[234..6]
gi\|186685759, gi... - gi\|23124767\|ref\|ZP_00106735.1\| COG1051: ADP-ribose pyrophosphatase [Nostoc punctiforme PCC 73102], g...	170.0	[0..2]	[234..5]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEAEYLANY DPKAFKAQLL TVDAVLFTYH DQQLKVLLVQ RSNHPFLGLW GLPGGFIDET  60
   61 CDESLEQTVL RKLAEKTAVV PPYIEQLCTV GNNSRDARGW SVTVCYTALM SYQACQIQIA 120
  121 SVSDVKWWPL ADVLQMPLAF DHLQLIEQAR ERLTQKALYS LVPGFALSEP FTLPELQHVH 180
  181 EVLLGKPIQG KSFRRRVEQA DLLIDTGLKR TERGRPANLY CLKPDTASYR FLRNLEC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	2fb1A
Description:	Crystal structure of Hypothetical protein BT0354
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.22556601647457	bayes_pls_golite062009
DNA binding	2.21146670711589	bayes_pls_golite062009
nucleic acid binding	2.19019816052583	bayes_pls_golite062009
binding	1.87848671831941	bayes_pls_golite062009
transcription factor activity	1.41176606828436	bayes_pls_golite062009
sequence-specific DNA binding	0.19465912398512	bayes_pls_golite062009
transcription activator activity	0.0178778906463769	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: