YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373291, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	552 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373291, gi|....

Description	E-value	Query Range	Subject Range
gi\|48731217, gi\|... - gi\|77461834\|ref\|YP_351341.1\| phosphate ABC transporter permease [Pseudomonas fluorescens Pf0-1], gi\|...	339.0	[0..4]	[551..9]
tr\|E4RDY0\|E4RDY0... - PstA OS=Pseudomonas putida (strain BIRD-1) GN=pstA PE=3 SV=1 gi\|24987136, gi\|... - gi\|26992003\|ref\|NP_747428.1\| phosphate ABC transporter inner membrane protein [Pseudomonas putida KT...	337.0	[0..4]	[551..9]
gi\|82739704, gi\|... - gi\|82739704\|ref\|ZP_00902496.1\| Phosphate transport system permease protein 2 [Pseudomonas putida F1]...	336.0	[0..4]	[551..9]
gi\|95113354 - gi\|95113354\|emb\|CAK18082.1\| phosphate ABC transporter, permease protein [Pseudomonas entomophila L48... gi\|95113354, gi\|... - gi\|95113354\|emb\|CAK18082.1\| phosphate ABC transporter, permease protein [Pseudomonas entomophila L48...	331.0	[0..4]	[552..9]
gi\|84323926, gi\|... - gi\|84323926\|ref\|ZP_00971991.1\| COG4985: ABC-type phosphate transport system, auxiliary component [Ps... gi\|53726782, gi\|... - gi\|53726782\|ref\|ZP_00141847.2\| COG4985: ABC-type phosphate transport system, auxiliary component [Ps... gi\|107104469 - gi\|107104469\|ref\|ZP_01368387.1\| hypothetical protein PaerPA_01005546 [Pseudomonas aeruginosa PACS2]	331.0	[0..4]	[552..11]
gi\|9951688, gi\|1... - gi\|9951688\|gb\|AAG08752.1\|AE004948_8 membrane protein component of ABC phosphate transporter [Pseudom... gi\|11350583 - pir\|\|B82976 membrane protein component of ABC phosphate transporter PA5367 [imported] - Pseudomonas ...	331.0	[0..4]	[552..11]
gi\|94417852, gi\|... - gi\|94417852\|ref\|ZP_01297669.1\| hypothetical protein PaerP_01000635 [Pseudomonas aeruginosa PA7], gi\|...	329.0	[0..4]	[552..11]
gi\|63258970, gi\|... - gi\|66048263\|ref\|YP_238104.1\| binding-protein dependent transport system inner membrane protein [Pseu...	319.0	[0..3]	[552..8]
gi\|28855846, gi\|... - gi\|28872590\|ref\|NP_795209.1\| phosphate ABC transporter, permease protein, putative [Pseudomonas syri... tr\|Q87U30\|Q87U30... - Phosphate ABC transporter, permease protein, putative OS=Pseudomonas syringae pv. tomato (strain DC3...	319.0	[0..4]	[552..10]
gi\|149114413, gi... - gi\|217973976\|ref\|YP_002358727.1\| phosphate ABC transporter, inner membrane subunit PstA [Shewanella ... gi\|160874684, gi... - gi\|160874684\|ref\|YP_001554000.1\| phosphate ABC transporter, inner membrane subunit PstA [Shewanella ...	304.0	[0..1]	[552..1]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKWVKSGSP WIWMTGGAVS ISLIAVLGLL LLIAWRGLSY FWPTTIYQWE LEDSSGVRST  60
   61 LIGEIYDREE VPTERLIAAG QVFKKDPGEF VTRYLVKTGN REFVGLDFRW ILATDIVSRS 120
  121 EPSEVAKLER AKNGNFYGYP VAVIENGKRL ELANDVIEAS LMEHIDRAVA LSDKALKLQK 180
  181 QDIGAINYEI ERLRLKERGY ELDGELTESL KAEFAAAKAA LHQDYLVLEK ELFALREQAA 240
  241 RDSVIVRDMR GVEVELKLDA VLDVTYVNHL SLISKVKHWF VSMGRF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.29
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [287-552]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LWDDPREANT EGGVFPAIFG TVFMVLVMAV IVTPFGVIAA IYMHEYAKKG PITKIIRIAV  60
   61 INLAGVPSIV YGVFGLGFFV YMMGGTIDQL FYAEALPAPT FGSPGVIWSA LTLAILTLPV 120
  121 VIVSTEEGLS RIPSAVRQGS LALGATKAET LWRIVIPMAS PAIMTGLILA VARAAGEVAP 180
  181 LMLVGVVKLA PTLPLDFNFP FVHLERKFMH LGFHIYDVGF QSPNVEAARP LVYATSFLLV 240
  241 TVIMALNLTA ISVRNHLREK YRSLEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	3.90877533326679	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.28172962705395	bayes_pls_golite062009
anion transmembrane transporter activity	3.22955827660391	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	3.14931335059246	bayes_pls_golite062009
ion transmembrane transporter activity	3.04751896510563	bayes_pls_golite062009
transporter activity	2.92901170384371	bayes_pls_golite062009
transmembrane transporter activity	2.82231503501622	bayes_pls_golite062009
active transmembrane transporter activity	2.62912035749387	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	2.58567076459772	bayes_pls_golite062009
primary active transmembrane transporter activity	2.58112472232827	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	2.57722913421807	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.57722913421807	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	2.57687258170314	bayes_pls_golite062009
ATPase activity, coupled	2.26533438516544	bayes_pls_golite062009
ATPase activity	2.12523930663356	bayes_pls_golite062009
substrate-specific transporter activity	2.08705004234574	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.06571106810861	bayes_pls_golite062009
pyrophosphatase activity	2.02843508794757	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.01869168199434	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.01800287925825	bayes_pls_golite062009
sulfate transmembrane transporter activity	2.00943245171704	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	1.88742737939609	bayes_pls_golite062009
cation transmembrane transporter activity	1.84323586388655	bayes_pls_golite062009
hydrolase activity	1.27489880499396	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.86861612741394	bayes_pls_golite062009
catalytic activity	0.79821499476005	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.56369901852468	bayes_pls_golite062009
sugar transmembrane transporter activity	0.44915416750675	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	0.19552843550095	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	0.19552843550095	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: