YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346805, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346805, gi|....

Description	E-value	Query Range	Subject Range
gi\|84318088 - gi\|84318088\|ref\|ZP_00966517.1\| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains ...	230.0	[0..2]	[256..253]
gi\|94417206 - gi\|94417206\|ref\|ZP_01297025.1\| hypothetical protein PaerP_01001002 [Pseudomonas aeruginosa PA7]	224.0	[0..2]	[256..253]
gi\|83637029, gi\|... - gi\|83648986\|ref\|YP_437421.1\| DNA polymerase I [Hahella chejuensis KCTC 2396], gi\|83637029\|gb\|ABC3299...	223.0	[0..2]	[257..251]
gi\|116053643, gi... - gi\|53726857\|ref\|ZP_00140325.2\| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains ...	223.0	[0..2]	[256..253]
DPO1_PSEAE - DNA polymerase I OS=Pseudomonas aeruginosa GN=polA PE=3 SV=1 DPO1_PSEAE - DNA polymerase I OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=...	223.0	[0..2]	[256..253]
gi\|107104595 - gi\|107104595\|ref\|ZP_01368513.1\| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2]	223.0	[0..2]	[256..253]
gi\|26986868, gi\|... - gi\|26986868\|ref\|NP_742293.1\| DNA polymerase I [Pseudomonas putida KT2440], gi\|24981469\|gb\|AAN65757.1...	217.0	[0..2]	[256..253]
gi\|77951812, gi\|... - gi\|77951812\|ref\|ZP_00816231.1\| DNA polymerase A [Marinobacter aquaeolei VT8], gi\|77869419\|gb\|EAP0068...	217.0	[0..2]	[257..305]
gi\|67087624, gi\|... - gi\|67153491\|ref\|ZP_00415236.1\| DNA polymerase, family A [Azotobacter vinelandii AvOP], gi\|67087624\|g... gi\|67153491, gi\|... - gi\|67153491\|ref\|ZP_00415236.1\| DNA polymerase, family A [Azotobacter vinelandii AvOP], ref\|ZP_000908...	215.0	[0..2]	[257..253]
gi\|82715554, gi\|... - gi\|82737390\|ref\|ZP_00900240.1\| DNA polymerase A [Pseudomonas putida F1], gi\|82715554\|gb\|EAP50618.1\| ...	215.0	[0..2]	[256..253]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAAGSQYLA SLLEPQAGDL SSPESQLKFA WFQQKLALTT RLTDAELTLL PVLSLESRHV  60
   61 ELVTPEYLAT ALQQLSRESV LGFDTETRAS FEPSVQHPLS LVQLATADTC YLFQQAVLGD 120
  121 AFAQLKPLLE NEQILKVGIG LRGDGQALKR DWNILVSPRL DLNWAMAQLG AGKEMGTRQL 180
  181 VAVLLHQRID KPKKITLSNW QQVPLSPAQI QYAALDALAA NHCFWQLIEK LRGFYGKTSA 240
  241 ENKSLLPTNL AARLASYFNP C

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	2hbjA
Description:	No description for 2hbjA was found.

Predicted functions:

Term	Confidence	Notes
ribonuclease activity	2.44407485797253	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	2.42289896976347	bayes_pls_golite062009
hydrolase activity	2.41899414621161	bayes_pls_golite062009
exonuclease activity	2.2254764376369	bayes_pls_golite062009
nuclease activity	2.16485349595693	bayes_pls_golite062009
endonuclease activity	2.14862853024281	bayes_pls_golite062009
catalytic activity	1.25233849524628	bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	1.17567646585446	bayes_pls_golite062009
endoribonuclease activity	1.13158139596857	bayes_pls_golite062009
deoxyribonuclease activity	1.10429096602931	bayes_pls_golite062009
exoribonuclease activity	0.993287337157856	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	0.873229204410164	bayes_pls_golite062009
ribonuclease H activity	0.869940880547909	bayes_pls_golite062009
DNA polymerase activity	0.717600245625866	bayes_pls_golite062009
DNA-directed DNA polymerase activity	0.568273228950698	bayes_pls_golite062009
3'-5'-exoribonuclease activity	0.42966661555123	bayes_pls_golite062009
exodeoxyribonuclease activity	0.263114072096431	bayes_pls_golite062009
exodeoxyribonuclease activity, producing 5'-phosphomonoesters	0.245820194716261	bayes_pls_golite062009
binding	0.122249780594036	bayes_pls_golite062009
3'-5' exonuclease activity	0.115254148049348	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: