YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346277, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	544 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346277, gi|....

Description	E-value	Query Range	Subject Range
gi\|86148161, gi\|... - gi\|86148161\|ref\|ZP_01066460.1\| iron(III) ABC transporter, permease protein [Vibrio sp. MED222], gi\|8...	237.0	[0..7]	[543..6]
gi\|77866806, gi\|... - gi\|77954274\|ref\|ZP_00818671.1\| putative iron(III) ABC transporter, permease protein [Marinobacter aq...	234.0	[0..9]	[537..25]
gi\|28807488 - gi\|28807488\|dbj\|BAC60753.1\| iron(III) ABC transporter, permease protein [Vibrio parahaemolyticus RIM... gi\|149748212, gi... - gi\|153838405\|ref\|ZP_01991072.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|... gi\|28899264, gi\|... - gi\|28899264\|ref\|NP_798869.1\| iron(III) ABC transporter, permease protein [Vibrio parahaemolyticus RI...	233.0	[0..8]	[537..7]
gi\|23464063, gi\|... - gi\|23500439\|ref\|NP_699879.1\| iron compound ABC transporter, permease protein, putative [Brucella sui... gi\|254703043 - gi\|254703043\|ref\|ZP_05164871.1\| iron compound ABC transporter, permease protein, putative [Brucella ... gi\|254699921 - gi\|254699921\|ref\|ZP_05161749.1\| iron compound ABC transporter, permease protein, putative [Brucella ... gi\|225629177, gi... - gi\|225629177\|ref\|ZP_03787210.1\| iron compound ABC transporter permease protein [Brucella ceti str. C... gi\|254715565 - gi\|254715565\|ref\|ZP_05177376.1\| iron compound ABC transporter, permease protein, putative [Brucella ... gi\|254712492 - gi\|254712492\|ref\|ZP_05174303.1\| iron compound ABC transporter, permease protein, putative [Brucella ...	232.0	[0..3]	[544..33]
gi\|84393827, gi\|... - gi\|84393827\|ref\|ZP_00992573.1\| iron(III) ABC transporter, permease protein [Vibrio splendidus 12B01]...	232.0	[0..7]	[543..6]
gi\|62317457, gi\|... - gi\|62317457\|ref\|YP_223310.1\| iron compound ABC transporter permease [Brucella abortus bv. 1 str. 9-9... gi\|83269437 - gi\|83269437\|ref\|YP_418728.1\| binding-protein dependent transport system inner membrane protein [Bruc... gi\|189021286, gi... - gi\|189022712\|ref\|YP_001932453.1\| Binding-protein-dependent transport systems inner membrane componen... gi\|82939711 - gi\|82939711\|emb\|CAJ12706.1\| Binding-protein-dependent transport systems inner membrane component [Br... gi\|254690956 - gi\|254690956\|ref\|ZP_05154210.1\| binding-protein-dependent transport systems inner membrane component... gi\|254695735 - gi\|254695735\|ref\|ZP_05157563.1\| binding-protein-dependent transport systems inner membrane component... gi\|225686472, gi... - gi\|225686472\|ref\|YP_002734444.1\| binding-protein-dependent transport systems inner membrane componen... gi\|237817009, gi... - gi\|237817009\|ref\|ZP_04596001.1\| iron compound ABC transporter permease [Brucella abortus str. 2308 A... gi\|254698739 - gi\|254698739\|ref\|ZP_05160567.1\| binding-protein-dependent transport systems inner membrane component... gi\|254732184 - gi\|254732184\|ref\|ZP_05190762.1\| binding-protein-dependent transport systems inner membrane component...	232.0	[0..3]	[544..33]
gi\|90412010, gi\|... - gi\|90412010\|ref\|ZP_01220017.1\| putative iron(III) ABC transporter, permease protein [Photobacterium ...	229.0	[0..7]	[543..6]
gi\|54310271, gi\|... - gi\|54310271\|ref\|YP_131291.1\| putative iron(III) ABC transporter, permease protein [Photobacterium pr...	229.0	[0..7]	[543..6]
gi\|90580257, gi\|... - gi\|90580257\|ref\|ZP_01236064.1\| putative iron(III) ABC transporter, permease protein [Vibrio angustum...	228.0	[0..7]	[543..6]
gi\|89050073, gi\|... - gi\|89074137\|ref\|ZP_01160636.1\| putative iron(III) ABC transporter, permease protein [Photobacterium ...	226.0	[0..7]	[543..6]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILGLARSWS LTGYAIAVLL VLPLLALLLQ AAQPDEAVFG HLLSTVLPTY IANSLWLILW  60
   61 VSIGSLLLAL PCAWLMARCE FVGRRYLQWA LLLPLAMPAY IVAYVYTDLL DYAGPVQRSL 120
  121 RALFGWSSPQ DYFFPDIRTL GGAACVLSLV LFPYIYLLAR TAFMEQSLNL AHASRIMGCS 180
  181 PWQSFWRLSL PMARPALAVG VALVAMETAA DFATVNYFAV PTLTTAVYDT WLGYGNLTAA 240
  241 AKLSAIILLV VFSLIGVERF ARRKQQLFQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	7.34
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
ATPase activity, coupled to transmembrane movement of substances	7.61517440483825	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	7.61475955752567	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	7.61475955752567	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	7.60261285611608	bayes_pls_golite062009
primary active transmembrane transporter activity	7.59280303111267	bayes_pls_golite062009
active transmembrane transporter activity	7.51217805691059	bayes_pls_golite062009
ATPase activity, coupled	6.95724531600418	bayes_pls_golite062009
ATPase activity	6.62620720611918	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.31173441402571	bayes_pls_golite062009
pyrophosphatase activity	6.23822548232138	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.21828378422716	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.21791205758921	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.46058403247103	bayes_pls_golite062009
ion transmembrane transporter activity	4.84048533553771	bayes_pls_golite062009
hydrolase activity	4.5940497987178	bayes_pls_golite062009
cation transmembrane transporter activity	4.17977204081224	bayes_pls_golite062009
transporter activity	4.16850252614298	bayes_pls_golite062009
transmembrane transporter activity	4.07281957844021	bayes_pls_golite062009
substrate-specific transporter activity	3.61142533583701	bayes_pls_golite062009
iron ion transmembrane transporter activity	3.37660206025104	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.9260252024097	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	2.85525880225875	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.19359047382598	bayes_pls_golite062009
sugar transmembrane transporter activity	2.147054904918	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.12981939421008	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.90343616526346	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.6718548573993	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	1.62768691451517	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	1.62768691451517	bayes_pls_golite062009
maltose-transporting ATPase activity	1.62768691451517	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
maltose transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
disaccharide transmembrane transporter activity	1.5877861023737	bayes_pls_golite062009
glucoside transmembrane transporter activity	1.54998466398412	bayes_pls_golite062009
anion transmembrane transporter activity	1.53656434391799	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.4745579365074	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.737817335114385	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.634824157502542	bayes_pls_golite062009
catalytic activity	0.350058049038907	bayes_pls_golite062009
sulfate transmembrane transporter activity	0.314028059232496	bayes_pls_golite062009
solute:cation symporter activity	0.0914244193736007	bayes_pls_golite062009
symporter activity	0.0914244193736007	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [270-544]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQSRIQAIDL YRLSPMQTLL GLGYCGMLLL LAFVLPSGIL LSYAINYFEQ SWDPLFWQLS  60
   61 VNSLTLALIT SLVCCVIALV LMFIRRVSPR SSDALPSRLA STGYALPGTV LAIGVLVPLT 120
  121 LLDFAINDIA DWLGMAGPGL LLTGSTVALV FAFCVRFVAI AIGSVESSYK RISPSLDMVS 180
  181 LTLGQSPRRL LQRVHLPLLT KGLFAGALLV FIESMKELPA ALLLRPIGFE NLATYVFQFV 240
  241 SDEKLEHGAL PAIVIVLVGL VPLIYLNRSL EQDNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
ATPase activity, coupled to transmembrane movement of substances	7.98776119907207	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	7.98726234902655	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	7.98726234902655	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	7.97287417765536	bayes_pls_golite062009
primary active transmembrane transporter activity	7.96249144456164	bayes_pls_golite062009
active transmembrane transporter activity	7.8678894318504	bayes_pls_golite062009
ATPase activity, coupled	7.29227234008448	bayes_pls_golite062009
ATPase activity	6.94069583578738	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.59903874016214	bayes_pls_golite062009
pyrophosphatase activity	6.52169210550643	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.50067149801529	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.5003333073452	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.78398318541319	bayes_pls_golite062009
ion transmembrane transporter activity	5.07829337366931	bayes_pls_golite062009
hydrolase activity	4.78607811092587	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
cation transmembrane transporter activity	4.35124450289762	bayes_pls_golite062009
substrate-specific transporter activity	3.91409799494188	bayes_pls_golite062009
iron ion transmembrane transporter activity	3.49869491399328	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.2006428628965	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.95360205425391	bayes_pls_golite062009
sugar transmembrane transporter activity	2.67115360425434	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.56867883684303	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.42763030383098	bayes_pls_golite062009
maltose-transporting ATPase activity	2.14010989459818	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	2.14010989459818	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	2.14010989459818	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
maltose transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
disaccharide transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
glucoside transmembrane transporter activity	2.04706530621258	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.92041789093512	bayes_pls_golite062009
anion transmembrane transporter activity	1.81715503217512	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.79613658743425	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.74937989644368	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.798639167073698	bayes_pls_golite062009
sulfate transmembrane transporter activity	0.72950761930647	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
maltooligosaccharide-importing ATPase activity	0.16532450344344	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: