YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372285, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	381 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372285, gi|....

Description	E-value	Query Range	Subject Range
gi\|77973946, gi\|... - gi\|77973946\|ref\|ZP_00829490.1\| COG0153: Galactokinase [Yersinia frederiksenii ATCC 33641], gi\|238788...	352.0	[0..2]	[378..1]
GAL1_SALDC - Galactokinase OS=Salmonella dublin (strain CT_02021853) GN=galK PE=3 SV=1 gi\|200391087, gi... - gi\|200391087\|ref\|ZP_03217698.1\| galactokinase [Salmonella enterica subsp. enterica serovar Virchow s... gi\|204930110, gi... - gi\|204930110\|ref\|ZP_03221131.1\| galactokinase [Salmonella enterica subsp. enterica serovar Javiana s... gi\|29142528, gi\|... - gi\|29142528\|ref\|NP_805870.1\| galactokinase [Salmonella enterica subsp. enterica serovar Typhi str. T... gi\|16759699 - gi\|16759699\|ref\|NP_455316.1\| galactokinase [Salmonella enterica subsp. enterica serovar Typhi str. C... GAL1_SALTI - Galactokinase OS=Salmonella typhi GN=galK PE=3 SV=1 GAL1_SALTI - Galactokinase OS=Salmonella typhi GN=galK PE=3 SV=1 gi\|238913334 - gi\|238913334\|ref\|ZP_04657171.1\| galactokinase [Salmonella enterica subsp. enterica serovar Tennessee... gi\|214001892 - gi\|214001892\|ref\|ZP_03412627.1\| galactokinase [Salmonella enterica subsp. enterica serovar Typhi str... GAL1_SALEP - Galactokinase OS=Salmonella enteritidis PT4 (strain P125109) GN=galK PE=3 SV=1 gi\|213023145 - gi\|213023145\|ref\|ZP_03337592.1\| galactokinase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213427697 - gi\|213427697\|ref\|ZP_03360447.1\| galactokinase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213613330 - gi\|213613330\|ref\|ZP_03371156.1\| galactokinase [Salmonella enterica subsp. enterica serovar Typhi str...	352.0	[0..2]	[377..1]
gi\|205327714, gi... - gi\|205327714\|gb\|EDZ14478.1\| galactokinase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- ... GAL1_SALTY - Galactokinase OS=Salmonella typhimurium GN=galK PE=3 SV=2 GAL1_SALNS - Galactokinase OS=Salmonella newport (strain SL254) GN=galK PE=3 SV=1 lcl\|NC_016856.1_... - [gene=galK] [protein=galactokinase] [protein_id=YP_005236493.1] [location=complement(838713..839861)... GAL1_SALTY - Galactokinase OS=Salmonella typhimurium GN=galK PE=3 SV=2 GAL1_SALTY - Galactokinase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=galK PE=3 SV=2	351.0	[0..2]	[377..1]
GAL1_ECOUT - Galactokinase OS=Escherichia coli (strain UTI89 / UPEC) GN=galK PE=3 SV=1 gi\|227884282, gi... - gi\|227884282\|ref\|ZP_04002087.1\| galactokinase [Escherichia coli 83972], gi\|227839034\|gb\|EEJ49500.1\| ... gi\|226898497, gi... - gi\|237707287\|ref\|ZP_04537768.1\| galactokinase [Escherichia sp. 3_2_53FAA], gi\|226898497\|gb\|EEH84756.... GAL1_ECO45 - Galactokinase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=galK PE=3 SV=1 GAL1_ECOL6 - Galactokinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=galK PE=3 SV=3 gi\|75237093, gi\|... - gi\|75237093\|ref\|ZP_00721147.1\| COG0153: Galactokinase [Escherichia coli F11], gi\|191174194\|ref\|ZP_03... GAL1_ECOK1 - Galactokinase OS=Escherichia coli O1:K1 / APEC GN=galK PE=3 SV=1 GAL1_ECOL6 - Galactokinase OS=Escherichia coli O6 GN=galK PE=3 SV=3 GAL1_ECOL5 - Galactokinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=galK PE=3 SV=1	350.0	[0..2]	[377..1]
GAL1_SALCH - Galactokinase OS=Salmonella choleraesuis GN=galK PE=3 SV=1 GAL1_SALCH - Galactokinase OS=Salmonella choleraesuis GN=galK PE=3 SV=1 GAL1_SALCH - Galactokinase OS=Salmonella choleraesuis (strain SC-B67) GN=galK PE=3 SV=1	350.0	[0..2]	[377..1]
gi\|86516662 - gi\|86516662\|gb\|ABC98023.1\| GalK [Shigella dysenteriae]	349.0	[0..2]	[377..1]
gi\|86516618 - gi\|86516618\|gb\|ABC98001.1\| GalK [Shigella boydii]	349.0	[0..2]	[377..1]
gi\|86516668 - gi\|86516668\|gb\|ABC98026.1\| GalK [Shigella flexneri]	349.0	[0..2]	[377..1]
GAL1_ECO24 - Galactokinase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=galK PE=3 SV=1 gi\|75235774, gi\|... - gi\|75235774\|ref\|ZP_00719929.1\| COG0153: Galactokinase [Escherichia coli E110019], gi\|193069539\|ref\|Z... gi\|193065587, gi... - gi\|75256341\|ref\|ZP_00728011.1\| COG0153: Galactokinase [Escherichia coli E22], gi\|193065587\|ref\|ZP_03... gi\|595700 - gi\|595700\|gb\|AAA57082.1\| galactokinase [unidentified cloning vector] gi\|188493829, gi... - gi\|75511359\|ref\|ZP_00734044.1\| COG0153: Galactokinase [Escherichia coli 53638], gi\|188493829\|ref\|ZP_... gi\|58030, gi\|58033 - gi\|58033\|emb\|CAA47410.1\| galK gene from E.coli [synthetic construct], gi\|58030\|emb\|CAA47408.1\| galK ... GAL1_ECOLI - Galactokinase (EC 2.7.1.6) (Galactose kinase) - Escherichia coli GAL1_ECO57 - Galactokinase OS=Escherichia coli O157:H7 GN=galK PE=3 SV=2 GAL1_ECOBW - Galactokinase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=galK PE=3 SV=1 EG10363 - galactokinase / Galactokinase gi\|254160820, gi... - gi\|254160820\|ref\|YP_003043928.1\| galactokinase [Escherichia coli B str. REL606], gi\|253972721\|gb\|ACT... gi\|254591308, gi... - gi\|254791908\|ref\|YP_003076745.1\| galactokinase [Escherichia coli O157:H7 str. TW14359], gi\|254591308... gi\|194435024, gi... - gi\|83568959\|ref\|ZP_00920424.1\| COG0153: Galactokinase [Shigella dysenteriae 1012], gi\|194435024\|ref\|... gi\|194439764, gi... - gi\|83584858\|ref\|ZP_00923517.1\| COG0153: Galactokinase [Escherichia coli 101-1], gi\|194439764\|ref\|ZP_... EG10363 - galactokinase / Galactokinase gi\|89107608, gi\|... - gi\|89107608\|ref\|AP_001388.1\| galactokinase [Escherichia coli str. K-12 substr. W3110], gi\|1651342\|db... gi\|13360244, gi\|... - gi\|15830039\|ref\|NP_308812.1\| galactokinase [Escherichia coli O157:H7 str. Sakai], gi\|13360244\|dbj\|BA... gi\|86516626, gi\|... - gi\|86516638\|gb\|ABC98011.1\| GalK [Shigella boydii], gi\|86516634\|gb\|ABC98009.1\| GalK [Shigella boydii]... gi\|86516664 - gi\|86516664\|gb\|ABC98024.1\| GalK [Shigella dysenteriae] gi\|195936745 - gi\|195936745\|ref\|ZP_03082127.1\| galactokinase [Escherichia coli O157:H7 str. EC4024] gi\|168800811, gi... - gi\|189376968\|gb\|EDU95384.1\| galactokinase [Escherichia coli O157:H7 str. EC508], gi\|168800811\|ref\|ZP... gi\|208731433, gi... - gi\|208814785\|ref\|ZP_03255964.1\| galactokinase [Escherichia coli O157:H7 str. EC4045], gi\|208731433\|g... gi\|208727444, gi... - gi\|208807643\|ref\|ZP_03249980.1\| galactokinase [Escherichia coli O157:H7 str. EC4206], gi\|208727444\|g... GAL1_ECO5E - Galactokinase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=galK PE=3 SV=1 gi\|208737944, gi... - gi\|208822459\|ref\|ZP_03262778.1\| galactokinase [Escherichia coli O157:H7 str. EC4042], gi\|208737944\|g... GAL1_ECOLC - Galactokinase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=galK PE=3 SV=1 gi\|217321756, gi... - gi\|217325535\|ref\|ZP_03441619.1\| galactokinase [Escherichia coli O157:H7 str. TW14588], gi\|217321756\|... GAL1_ECOSE - Galactokinase OS=Escherichia coli (strain SE11) GN=galK PE=3 SV=1 gi\|188015487, gi... - gi\|188015487\|gb\|EDU53609.1\| galactokinase [Escherichia coli O157:H7 str. EC4113], gi\|168750249\|ref\|Z... gi\|168763347, gi... - gi\|189366430\|gb\|EDU84846.1\| galactokinase [Escherichia coli O157:H7 str. EC4501], gi\|168763347\|ref\|Z... gi\|189355897, gi... - gi\|189355897\|gb\|EDU74316.1\| galactokinase [Escherichia coli O157:H7 str. EC4401], gi\|168757046\|ref\|Z... gi\|187768179, gi... - gi\|187768179\|gb\|EDU32023.1\| galactokinase [Escherichia coli O157:H7 str. EC4196], gi\|168776498\|ref\|Z... gi\|189363413, gi... - gi\|189363413\|gb\|EDU81832.1\| galactokinase [Escherichia coli O157:H7 str. EC4486], gi\|168767202\|ref\|Z... gi\|189373137, gi... - gi\|189373137\|gb\|EDU91553.1\| galactokinase [Escherichia coli O157:H7 str. EC869], gi\|168786916\|ref\|ZP... gi\|189003027, gi... - gi\|189003027\|gb\|EDU72013.1\| galactokinase [Escherichia coli O157:H7 str. EC4076], gi\|168779245\|ref\|Z... gi\|124531874, gi... - gi\|124531874\|ref\|ZP_01701973.1\| galactokinase [Escherichia coli B], gi\|124498295\|gb\|EAY45813.1\| gala... GAL1_ECO55 - Galactokinase OS=Escherichia coli (strain 55989 / EAEC) GN=galK PE=3 SV=1 GAL1_ECO8A - Galactokinase OS=Escherichia coli O8 (strain IAI1) GN=galK PE=3 SV=1	349.0	[0..2]	[377..1]

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Predicted Domain #1

Region A:
Residues: [1-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPAQRATK LFVQTFGTKA DDLYQAPGRV NLIGEYTDYN DGFVLPAAIN FHTVIAVKRR  60
   61 EDSKFRAVAD AFPGQIKEWT FGKETEIHPE DGWVNYLKGF TAAMANTGLI AKGLDLAVVG 120
  121 DVPLAAGLSS SGALVVAFGT AISDSSQLHL SPMAVAQLAQ RGEYRYVASA CSIMDHMVCA 180
  181 MGEPDHALLI DCLDLDSEAI AIPENLSLII IDAHIEKQRL ATISQQRREE CAQAAEFFGL 240
  241 DALRHLDLRQ LESAKNKLDE TLYRRAKHVV TENKRTQSAA RALEQNNISK FSLLMAQSHQ 300
  301 SLRDDFEVTL PEFDTLVDIV SQVIGERGGI RMTDGCVVAL VDHELTDAVV SAVEQAFFEQ 360
  361 TGIDATVYLC SASSGAGRID S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.69897
Match:	1wuuA
Description:	crystal structure of human galactokinase complexed with MgAMPPNP and galactose
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphotransferase activity, alcohol group as acceptor	2.57444343595083	bayes_pls_golite062009
kinase activity	2.45533953107206	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.15678581504347	bayes_pls_golite062009
galactokinase activity	1.98579505313408	bayes_pls_golite062009
transferase activity	1.44847475955289	bayes_pls_golite062009
galactose binding	1.09822999475915	bayes_pls_golite062009
ribonuclease activity	0.861708516886368	bayes_pls_golite062009
catalytic activity	0.836142537655721	bayes_pls_golite062009
binding	0.81933081762145	bayes_pls_golite062009
nuclease activity	0.750627453499812	bayes_pls_golite062009
hydrolase activity	0.740929677099368	bayes_pls_golite062009
3'-5'-exoribonuclease activity	0.29372632468704	bayes_pls_golite062009
exoribonuclease activity	0.268974873769861	bayes_pls_golite062009
protein binding	0.252740644591197	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	0.24527927280502	bayes_pls_golite062009
carbohydrate kinase activity	0.236567582613739	bayes_pls_golite062009
structural constituent of ribosome	0.168901349358066	bayes_pls_golite062009
peptidase activity	0.14842914604274	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: