YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17986380, gi\|...
Organism:	Brucella melitensis bv. 1 str. 16M
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17986380, gi|....

Description	E-value	Query Range	Subject Range
gi\|114328758, gi... - gi\|114328758\|ref\|YP_745915.1\| electron transfer flavoprotein beta-subunit [Granulibacter bethesdensi...	296.0	[0..1]	[245..35]
gi\|33597651 - gi\|33597651\|ref\|NP_885294.1\| electron transfer flavoprotein beta-subunit [Bordetella parapertussis 1... gi\|33576869, gi\|... - gi\|33602430\|ref\|NP_889990.1\| electron transfer flavoprotein beta-subunit [Bordetella bronchiseptica ... gi\|33574079 - gi\|33574079\|emb\|CAE38403.1\| electron transfer flavoprotein beta-subunit [Bordetella parapertussis]	294.0	[0..1]	[245..18]
gi\|120594001, gi... - gi\|84713181\|ref\|ZP_01020967.1\| electron transfer flavoprotein beta-subunit [Polaromonas naphthaleniv...	289.0	[0..1]	[245..1]
gi\|49089300, gi\|... - gi\|67523567\|ref\|XP_659843.1\| hypothetical protein AN2239.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	287.0	[0..1]	[248..650]
gi\|90420253, gi\|... - gi\|90420253\|ref\|ZP_01228161.1\| electron transfer flavoprotein beta-subunit [Aurantimonas sp. SI85-9A... gi\|90420253, gi\|... - gi\|90420253\|ref\|ZP_01228161.1\| electron transfer flavoprotein beta-subunit [Aurantimonas sp. SI85-9A...	287.0	[0..1]	[245..1]
gi\|67776713, gi\|... - gi\|91789003\|ref\|YP_549955.1\| electron transfer flavoprotein beta-subunit [Polaromonas sp. JS666], gi...	287.0	[0..1]	[245..1]
gi\|114704363, gi... - gi\|114704363\|ref\|ZP_01437271.1\| electron transfer flavoprotein, beta subunit [Fulvimarina pelagi HTC...	286.0	[0..1]	[245..1]
gi\|114341375, gi... - gi\|114570913\|ref\|YP_757593.1\| electron transfer flavoprotein beta-subunit [Maricaulis maris MCS10], ...	285.0	[0..1]	[248..1]
gi\|33603732, gi\|... - gi\|33603732\|ref\|NP_891292.1\| electron transfer flavoprotein beta-subunit [Bordetella bronchiseptica ...	285.0	[0..1]	[245..1]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLVAVKRV VDYNVKIRVK GDGSGVELAN VKMSMNPFDE IAVEEAIRLK EAGKVTEIVA  60
   61 VSVGPAQAQE TLRTALAMGA DRAILVKTDE TVEPLGVAKV LKGVVEAEKP DLVFLGKQAI 120
  121 DDDSNQTGQM LSALLNWSQA TFASKVELGE GSAKVTREVD GGLQTIDVKL PAIVTVDLRL 180
  181 NQPRYASLPN IMKAKKKPLD EKSPADFGAD IAPRLKVLKT EEPGGRKAGV KVGSVSELVE 240
  241 KLKADGVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.69897
Match:	1efpB
Description:	Small, beta subunit of electron transfer flavoprotein ETFP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.91619517870463	bayes_pls_golite062009
nucleic acid binding	1.38436645708366	bayes_pls_golite062009
DNA binding	1.35936746868519	bayes_pls_golite062009
ligase activity	1.13489674466232	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.883268134837366	bayes_pls_golite062009
catalytic activity	0.828867994386867	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.724532065311415	bayes_pls_golite062009
electron carrier activity	0.40873603017227	bayes_pls_golite062009
transferase activity	0.40273889227698	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: