| Protein: | Vmat-PE, Vmat-PC... |
| Organism: | Drosophila melanogaster |
| Length: | 610 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Vmat-PE, Vmat-PC....
| Description | E-value | Query Range |
Subject Range |
|
|
368.0 | [0..1] | [610..1] |
|
Region A: Residues: [1-180] |
1 11 21 31 41 51
| | | | | |
1 MQSSTDAGNG GPRKHTQSTA PQKQSEISET TSFTVNANTT TNSQQQQIPG GPASNTPSKN 60
61 PFKQQLDSNQ QNGNMEPDCG IMGVGKEPPV PPPPTYQSQT YAGRQAPPPA DQYREEDPRA 120
121 AGSWAAAKSW MVSWRGSNRL VLVIVAIALL LDNMLLTTVV PIIPEFLYDI RHPDAPLDSF 180
181
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [181-610] |
1 11 21 31 41 51
| | | | | |
1 PRTPLTSNVP PPPTPCPCNK DGSEAAPLEI STISPEENET YYRELEERHN ELVGETVEVG 60
61 LLFASKAFVQ LLVNPIVGPL THRIGYSIPM FAGFVIMFLS TIIFAFGRSY LVLFVARALQ 120
121 GIGSSCSSVS GMGMLADRFT DDKERGNAMG IALGGLALGV LIGPPFGGVM YEFVGKSAPF 180
181 LILAALALGD GLLQLFMLQP SIQKAETEPP SLKSLISDPY ILIAAGAITF ANMGIAMLEP 240
241 SLPLWMVDNM GATRWEQGVA FLPASISYLI GTNLFGPLGH KIGRWFAACL GLIIIGGCLI 300
301 FIPMATSITH LIIPNAGLGF AIGMVDSSMM PELGYLVDIR HSAVYGSVYA LGDVAFCVGF 360
361 AVGPALSGSL VKSIGFEWML FGIAILCFMY APLLTLLKNP PTSDEKKSLI YGRDRAQVRY 420
421 VTYQNYEEDE
|
| Detection Method: | |
| Confidence: | 40.09691 |
| Match: | 1pw4A |
| Description: | Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transporter activity | 4.09176719149278 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.59744164024479 | bayes_pls_golite062009 |
| transmembrane transporter activity | 3.5865018981083 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 3.54194478414824 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.21266150105753 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.79369588808394 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.59419818573076 | bayes_pls_golite062009 |
| organic acid transmembrane transporter activity | 1.24937104052238 | bayes_pls_golite062009 |
| secondary active transmembrane transporter activity | 1.22264637452409 | bayes_pls_golite062009 |
| binding | 1.05701989682533 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| glycerol transmembrane transporter activity | 0.812001619402678 | bayes_pls_golite062009 |
| symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| solute:cation symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| cation:sugar symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
| sugar:hydrogen symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
