Protein: | gi|207342065 |
Organism: | Saccharomyces cerevisiae AWRI1631 |
Length: | 602 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207342065.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..602] | [1..602] |
|
0.0 | [12..566] | [18..555] |
|
0.0 | [12..563] | [16..550] |
|
0.0 | [12..566] | [16..553] |
|
0.0 | [12..566] | [3..540] |
|
0.0 | [12..566] | [16..553] |
|
0.0 | [13..566] | [40..577] |
Region A: Residues: [1-260] |
1 11 21 31 41 51 | | | | | | 1 MRSVTNAFGN SGELNDQVDE TGYRKFDIHE GILFCIELSE TMFKESSDLE YKSPLLEILE 60 61 SLDELMSQLV ITRPGTAIGC YFYYCNREDA KEGIYELFPL RDINATFMKK LNDLLEDLSS 120 121 GRISLYDYFM FQQTGSEKQV RLSVLFTFML DTFLEEIPGQ KQLSNKRVFL FTDIDKPQEA 180 181 QDIDERARLR RLTIDLFDNK VNFATFFIGY ADKPFDNEFY SDILQLGSHT NENTGLDSEF 240 241 DGPSTKPIDA KYIKSRILRK |
Region B: Residues: [289-313] |
1 11 21 31 41 51 | | | | | | 1 MYTHEKAGVR YKLVYEHEDI RQEAY |
Region C: Residues: [476-602] |
1 11 21 31 41 51 | | | | | | 1 NMKKVTQSIM GYFNLRDGYN PSDFKNPLLQ KHYKVLHDYL LQIETTFDEN ETPNTKKDRM 60 61 MREDDSLRKL YYIRNKILES EKSEDPIIQR LNKYVKIWNM FYKKFNDDNI SIKEEKKPFD 120 121 KKPKFNI |
Detection Method: | |
Confidence: | 207.0 |
Match: | 1jeqA_ |
Description: | DNA binding C-terminal domain of ku70; Ku70 subunit |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
double-stranded telomeric DNA binding | 8.64621483095491 | bayes_pls_golite062009 |
DNA-dependent protein kinase activity | 7.33495559751688 | bayes_pls_golite062009 |
telomeric DNA binding | 5.16364366157397 | bayes_pls_golite062009 |
transcription regulator activity | 3.05720838352689 | bayes_pls_golite062009 |
promoter binding | 3.01492777192913 | bayes_pls_golite062009 |
transcription activator activity | 2.87080577911324 | bayes_pls_golite062009 |
binding | 2.75824485094584 | bayes_pls_golite062009 |
protein binding | 2.58357303743968 | bayes_pls_golite062009 |
nucleic acid binding | 2.08531850924748 | bayes_pls_golite062009 |
DNA binding | 1.91667917801679 | bayes_pls_golite062009 |
transcription repressor activity | 1.69798374416156 | bayes_pls_golite062009 |
transcription factor activity | 1.37299910766941 | bayes_pls_golite062009 |
DNA-dependent ATPase activity | 0.985753648509262 | bayes_pls_golite062009 |
protein complex binding | 0.94234534987624 | bayes_pls_golite062009 |
sequence-specific DNA binding | 0.914051610867509 | bayes_pls_golite062009 |
single-stranded DNA binding | 0.814975395718076 | bayes_pls_golite062009 |
protein dimerization activity | 0.73404855126602 | bayes_pls_golite062009 |
DNA helicase activity | 0.720743494912414 | bayes_pls_golite062009 |
transcription corepressor activity | 0.702777559747981 | bayes_pls_golite062009 |
protein heterodimerization activity | 0.64812784969409 | bayes_pls_golite062009 |
ATP-dependent DNA helicase activity | 0.506640285146188 | bayes_pls_golite062009 |
structure-specific DNA binding | 0.450760554291027 | bayes_pls_golite062009 |
structural molecule activity | 0.375125487765613 | bayes_pls_golite062009 |
receptor binding | 0.234020194580985 | bayes_pls_golite062009 |
transcription factor binding | 0.184852480703492 | bayes_pls_golite062009 |
protein C-terminus binding | 0.15516806759612 | bayes_pls_golite062009 |
identical protein binding | 0.125363466534611 | bayes_pls_golite062009 |
collagen binding | 0.113837148027681 | bayes_pls_golite062009 |
Region A: Residues: [261-288] |
1 11 21 31 41 51 | | | | | | 1 KEVKRIMFQC PLILDEKTNF IVGVKGYT |
Region B: Residues: [314-475] |
1 11 21 31 41 51 | | | | | | 1 SKRKFLNPIT GEDVTGKTVK VYPYGDLDIN LSDSQDQIVM EAYTQKDAFL KIIGFRSSSK 60 61 SIHYFNNIDK SSFIVPDEAK YEGSIRTLAS LLKILRKKDK IAILWGKLKS NSHPSLYTLS 120 121 PSSVKDYNEG FYLYRVPFLD EIRKFPSLLS YDDGSEHKLD YD |
Detection Method: | |
Confidence: | 207.0 |
Match: | 1jeqA_ |
Description: | DNA binding C-terminal domain of ku70; Ku70 subunit |
Matching Structure (courtesy of the PDB): |