YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218754890, gi...
Organism:	Mycobacterium tuberculosis GM 1503
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218754890, gi....

Description	E-value	Query Range	Subject Range
gi\|55980997, gi\|... - gi\|55980997\|ref\|YP_144294.1\| thiosulfate sulfurtransferase [Thermus thermophilus HB8], gi\|55772410\|d... gi\|46196598, gi\|... - gi\|46198974\|ref\|YP_004641.1\| thiosulfate sulfurtransferase [Thermus thermophilus HB27], gi\|46196598\|...	228.0	[0..2]	[276..4]
gi\|54022561, gi\|... - gi\|54022561\|ref\|YP_116803.1\| putative thiosulfate sulfurtransferase [Nocardia farcinica IFM 10152], ...	228.0	[0..1]	[277..1]
gi\|126437477, gi... - gi\|92906638\|ref\|ZP_01275418.1\| Thiosulfate sulfurtransferase [Mycobacterium sp. JLS], gi\|92434938\|gb... gi\|108801492, gi... - gi\|108801492\|ref\|YP_641689.1\| thiosulfate sulfurtransferase [Mycobacterium sp. MCS], gi\|108771911\|gb... gi\|92914329, gi\|... - gi\|92914329\|ref\|ZP_01282956.1\| Thiosulfate sulfurtransferase [Mycobacterium sp. KMS], gi\|92441446\|gb...	227.0	[0..1]	[277..1]
gi\|90204837, gi\|... - gi\|90204837\|ref\|ZP_01207479.1\| Thiosulfate sulfurtransferase [Mycobacterium vanbaalenii PYR-1], gi\|9...	224.0	[0..1]	[277..1]
gi\|89319406, gi\|... - gi\|89340733\|ref\|ZP_01192990.1\| Rhodanese-like [Mycobacterium flavescens PYR-GCK], gi\|89319406\|gb\|EAS...	224.0	[0..1]	[277..1]
gi\|48835999 - ref\|ZP_00292996.1\| COG2897: Rhodanese-related sulfurtransferase [Thermobifida fusca] gi\|72163118, gi\|... - gi\|72163118\|ref\|YP_290775.1\| thiosulfate sulfurtransferase [Thermobifida fusca YX], gi\|71916850\|gb\|A...	223.0	[0..1]	[276..1]
gi\|55670303 - gi\|55670303\|pdb\|1UAR\|A Chain A, Crystal Structure Of Rhodanese From Thermus Thermophilus Hb8	219.0	[0..2]	[276..4]
gi\|29830580, gi\|... - gi\|29830580\|ref\|NP_825214.1\| thiosulfate sulfurtransferase [Streptomyces avermitilis MA-4680], gi\|29...	219.0	[0..1]	[277..1]
gi\|133916152, gi... - gi\|134103529\|ref\|YP_001109190.1\| thiosulfate sulfurtransferase [Saccharopolyspora erythraea NRRL 233... THTR_SACER - Putative thiosulfate sulfurtransferase OS=Saccharopolyspora erythraea GN=cysA PE=1 SV=1	218.0	[0..1]	[274..1]
gi\|222450857, gi... - gi\|222526978\|ref\|YP_002571449.1\| Rhodanese domain protein [Chloroflexus sp. Y-400-fl], gi\|222450857\|... gi\|53796683 - ref\|ZP_00357619.1\| COG2897: Rhodanese-related sulfurtransferase [Chloroflexus aurantiacus] gi\|76258728, gi\|... - gi\|76258728\|ref\|ZP_00766382.1\| Rhodanese-like [Chloroflexus aurantiacus J-10-fl], gi\|76166457\|gb\|EAO...	218.0	[0..2]	[275..5]

Back

Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARCDVLVSA DWAESNLHAP KVVFVEVDED TSAYDRDHIA GAIKLDWRTD LQDPVKRDFV  60
   61 DAQQFSKLLS ERGIANEDTV ILYGGNNNWF AAYAYWYFKL YGHEKVKLLD GGRKKWELDG 120
  121 RPLSSDPVSR PVTSYTASPP DNTIRAFRDE VLAAINVKNL IDVRSPDEFS GKILAPAHLP 180
  181 QEQSQRPGHI PGAINVPWSR AANEDGTFKS DEELAKLYAD AGLDNSKETI AYCRIGERSS 240
  241 HTWFVLRELL GHQNVKNYDG SWTEYGSLVG APIELGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.0
Match:	1uarA
Description:	Crystal structure of Rhodanese from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
sulfurtransferase activity	2.90539767285523	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	2.27106357502695	bayes_pls_golite062009
thiosulfate sulfurtransferase activity	1.13554444375998	bayes_pls_golite062009
binding	0.746344090872559	bayes_pls_golite062009
catalytic activity	0.687308230067573	bayes_pls_golite062009
protein binding	0.26324773851743	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: