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View Structure Prediction Details

Protein: gi|3089607
Organism: Thermus sp. IM6501
Length: 588 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3089607.

Description E-value Query
Range
Subject
Range
gi|62530449 - gi|62530449|gb|AAX85453.1| amylase [Bacillus sp. WPD616]
551.0 [0..1] [588..1]
gi|56419238, gi|... - gi|56419238|ref|YP_146556.1| alpha-cyclodextrinase [Geobacillus kaustophilus HTA426], gi|56379080|db...
551.0 [0..1] [588..1]
gi|21730244, gi|... - gi|21730245|pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd, gi|21730244|pdb|...
550.0 [0..1] [588..1]
gi|15375096 - gi|15375096|dbj|BAB63955.1| alpha-cyclodextrinase [Geobacillus stearothermophilus]
547.0 [0..1] [588..1]
gi|22129791 - gi|22129791|gb|AAL62457.2| alpha-cyclodextrinase [Thermus sp. YBJ-1]
546.0 [0..1] [588..1]
gi|51038505 - gi|51038505|gb|AAT94159.1| maltogenic amylase [Bacillus thermoalkalophilus]
526.0 [0..1] [587..1]

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Predicted Domain #1
Region A:
Residues: [1-588]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKEAIHHRS TDNFAYAYDS ETLHLRLQTK KNDVDHVELL FGDPYEWHDG AWQFQTMPMR  60
   61 KTGSDGLFDY WLAEVKPPYR RLRYGFVLRA GGEKLVYTEK GFYHEAPSDD TAYYFCFPFL 120
  121 HRVDLFQAPD WVKDTVWYQI FPERFANGNP AISPKGARPW GSEDPTPTSF FGGDLQGIID 180
  181 HLDYLADLGI TGIYLTPIFR APSNHKYDTA DYFEIDPHFG DKETLKTLVK RCHEKGIRVM 240
  241 LDAVFNHCGY EFAPFQDVLK NGAASRYKDW FHIREFPLQT EPRPNYDTFA FVPHMPKLNT 300
  301 AHPEVKRYLL DVATYWIREF DIDGWRLDVA NEIDHQFWRE FRQAVKALKP DVYILGEIWH 360
  361 DAMPWLRGDQ FDAVMNYPLA DAALRFFAKE DMSASEFADR LMHVLHSYPK QVNEAAFNLL 420
  421 GSHDTPRLLT VCGGDVRKVK LLFLFQLTFT GSPCIYYGDE IGMTGGNDPE CRKCMVWDPE 480
  481 KQNKELYEHV KQLIALRKQY RALRRGDVAF LTADDEVNHL VYAKTDGNET VMIIINRSNE 540
  541 AAEIPMPIDA RGKWLVNLLT GERFAAEAET LCVSLPPYGF VLYAVESW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 158.0
Match: 1smaA
Description: Maltogenic amylase, N-terminal domain N; Maltogenic amylase; Maltogenic amylase, central domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity, hydrolyzing O-glycosyl compounds 4.55801959095491 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 4.29108420555514 bayes_pls_golite062009
hydrolase activity 2.98140830993539 bayes_pls_golite062009
alpha-amylase activity 2.09193270404736 bayes_pls_golite062009
amylase activity 2.03484942782894 bayes_pls_golite062009
chitinase activity 1.947859226275 bayes_pls_golite062009
glucosidase activity 1.92306554001182 bayes_pls_golite062009
catalytic activity 1.85569074294201 bayes_pls_golite062009
hexosaminidase activity 0.763360027922833 bayes_pls_golite062009
binding 0.63693798355947 bayes_pls_golite062009
alpha-glucosidase activity 0.502835520523619 bayes_pls_golite062009
carbohydrate binding 0.28185708488534 bayes_pls_golite062009
transferase activity, transferring hexosyl groups 0.266938437560648 bayes_pls_golite062009
beta-N-acetylhexosaminidase activity 0.263065978664289 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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