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View Structure Prediction Details

Protein: AMPL3_ARATH
Organism: Arabidopsis thaliana
Length: 583 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMPL3_ARATH.

Description E-value Query
Range
Subject
Range
gi|27363298, gi|... - gi|27363298|gb|AAO11568.1| At4g30920/F6I18_170 [Arabidopsis thaliana], gi|15983519|gb|AAL11627.1|AF4...
663.0 [0..1] [583..1]

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Predicted Domain #1
Region A:
Residues: [1-583]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTLVTSFA SSSSRFHFRS FSSSPSSLSS CFVRFQFPSR LRLAFAVTPL YSSSRAMAHT  60
   61 ISHATLGLTQ ANSVDHPKIS FSGKEIDVTE WKGDILAVGV TEKDMAKDVN SKFENPILKK 120
  121 LDAHLGGLLA DVSSEEDFSG KPGQSTVLRL PGLGSKRVGL IGLGKSASTP SAFQSLGEAV 180
  181 AAAAKASQAS SVAVVLASSE SVSNESKLCS ASAIASGTVL GLFEDSRYKS ESKKPSLKSV 240
  241 DIIGFGSGPE LEKKLKYAEH VSYGVIFGKE LVNSPANVLT PAVLAEEALN LASMYSDVMT 300
  301 ANILNEEQCK ELKMGSYLAV AAASANPPHF IHLIYKPSSG PVKTKLALVG KGLTFDSGGY 360
  361 NIKTGPGCLI ELMKFDMGGS AAVLGAAKAI GQIKPPGVEV HFIVAACENM ISGTGMRPGD 420
  421 VLTASNGKTI EVNNTDAEGR LTLADALVYA CNQGVDKVVD LATLTGACII ALGTSMAGIY 480
  481 TPSDKLAKEV IAASERSGEK LWRMPMEESY WEMMKSGVAD MVNTGGRAGG SITAALFLKQ 540
  541 FVSEDVEWMH IDMAGPVWNE KKKAATGFGV ATLVEWVQNH SSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 172.0
Match: 1gytA
Description: Leucine aminopeptidase, C-terminal domain; Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
peptidase activity 3.33046421415418 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 2.92029075689694 bayes_pls_golite062009
exopeptidase activity 1.92607656615233 bayes_pls_golite062009
metallopeptidase activity 1.36622846208556 bayes_pls_golite062009
carboxypeptidase activity 1.26773013808101 bayes_pls_golite062009
binding 1.02634976114785 bayes_pls_golite062009
metalloexopeptidase activity 0.675221914435689 bayes_pls_golite062009
transcription regulator activity 0.655590943576337 bayes_pls_golite062009
catalytic activity 0.539156541742258 bayes_pls_golite062009
metallocarboxypeptidase activity 0.406156022753981 bayes_pls_golite062009
hydrolase activity 0.257132806706163 bayes_pls_golite062009
nucleic acid binding 0.163202888003221 bayes_pls_golite062009
DNA binding 0.124466211134144 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle