| Protein: | gi|18399933, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 414 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18399933, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
248.0 | [0..5] | [410..485] |
|
Region A: Residues: [1-414] |
1 11 21 31 41 51
| | | | | |
1 MRITVMTAGE QIITLDVDSQ ETVENVKALL EVESNVPIQQ QQLLYNGNEM GNSDKLSALG 60
61 VKDDDLLMMM VSNASSGSAT SAAGNDLGMN PDGSALNPAA FQQHIRGDSN LMGQLFQNDP 120
121 ELAQVISGSD LNKLQDVLRA RHRQRSVLQR QKEEELALLY ADPFDVEAQR KIEAAIRQKG 180
181 IDENWEAALE HNPEGFARVI MLYVDMEVNG VPLKAFVDSG AQSTIISKSC AERCGLLRLM 240
241 DQRYKGIAHG VGQTEILGRI HVAPIKIGNN FYPCSFVVLD SPNMEFLFGL DMLRKHQCTI 300
301 DLKENVMTVG GGEVSVPFLQ EKDIPSRFLD EERVPNDASS SGATVPSGFT EKKNNTVANP 360
361 TSQQPKRQNT SEGPEFEAKI AKLVELGFSR DSVIQALKLF EGNEEQAAGF LFGG
|
| Detection Method: |  |
| Confidence: | 11.0 |
| Match: | 1oqyA |
| Description: | Structure of the DNA repair protein hHR23a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| damaged DNA binding | 1.86156898085013 | bayes_pls_golite062009 |
| ubiquitin binding | 1.51353171763573 | bayes_pls_golite062009 |
| small conjugating protein binding | 1.32287555841145 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.28693841442604 | bayes_pls_golite062009 |
| binding | 1.2399535394287 | bayes_pls_golite062009 |
| protein binding | 0.837884574982009 | bayes_pls_golite062009 |
| nucleic acid binding | 0.727316459461668 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.670372579002346 | bayes_pls_golite062009 |
| DNA binding | 0.522752583145226 | bayes_pls_golite062009 |
| hydrolase activity | 0.385840034768257 | bayes_pls_golite062009 |
| peptidase activity | 0.192792832996705 | bayes_pls_golite062009 |
