| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.67204838207] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| INO80 |
|
|
|
| RVB1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| Ino80 complex | 2.779E-6 | 2 | 11 | 2 | 6292 |
| DNA helicase complex | 2.779E-6 | 2 | 11 | 2 | 6292 |
| nuclear chromatin | 1.3278E-4 | 2 | 73 | 2 | 6292 |
| chromatin | 1.4784E-4 | 2 | 77 | 2 | 6292 |
| chromatin remodeling complex | 2.4511E-4 | 2 | 99 | 2 | 6292 |
| nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
| nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
| chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
| Swr1 complex | 4.7627E-3 | 2 | 15 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| chromatin remodeling | 1.151E-4 | 2 | 68 | 2 | 6292 |
| chromatin modification | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| chromatin organization | 1.036E-3 | 2 | 203 | 2 | 6292 |
| transcription from RNA polymerase II promoter | 2.8267E-3 | 2 | 335 | 2 | 6292 |
| transcription, DNA-dependent | 6.3792E-3 | 2 | 503 | 2 | 6292 |
| RNA biosynthetic process | 6.5067E-3 | 2 | 508 | 2 | 6292 |
| transcription | 7.6839E-3 | 2 | 552 | 2 | 6292 |
| chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ATP-dependent 5'-3' DNA helicase activity | 1.0611E-6 | 2 | 7 | 2 | 6292 |
| 5'-3' DNA helicase activity | 1.4147E-6 | 2 | 8 | 2 | 6292 |
| ATP-dependent DNA helicase activity | 7.7306E-6 | 2 | 18 | 2 | 6292 |
| DNA helicase activity | 2.8346E-5 | 2 | 34 | 2 | 6292 |
| ATP-dependent helicase activity | 5.6994E-5 | 2 | 48 | 2 | 6292 |
| purine NTP-dependent helicase activity | 5.6994E-5 | 2 | 48 | 2 | 6292 |
| DNA-dependent ATPase activity | 7.5032E-5 | 2 | 55 | 2 | 6292 |
| helicase activity | 1.7194E-4 | 2 | 83 | 2 | 6292 |
| ATPase activity, coupled | 5.5711E-4 | 2 | 149 | 2 | 6292 |
| ATPase activity | 1.1194E-3 | 2 | 211 | 2 | 6292 |
| nucleoside-triphosphatase activity | 2.7262E-3 | 2 | 329 | 2 | 6292 |
| hydrolase activity, acting on acid anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
| pyrophosphatase activity | 3.1391E-3 | 2 | 353 | 2 | 6292 |