From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.703901251517] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
LRG1 |
|
|
|
RGD2 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
cellular bud neck | 4.1715E-4 | 2 | 129 | 2 | 6292 |
cellular bud | 6.9196E-4 | 2 | 166 | 2 | 6292 |
site of polarized growth | 7.0879E-4 | 2 | 168 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
small GTPase mediated signal transduction | 1.0186E-4 | 2 | 64 | 2 | 6292 |
intracellular signal transduction | 3.312E-4 | 2 | 115 | 2 | 6292 |
intracellular signaling pathway | 5.2022E-4 | 2 | 144 | 2 | 6292 |
signaling pathway | 8.5067E-4 | 2 | 184 | 2 | 6292 |
signal transduction | 1.1516E-3 | 2 | 214 | 2 | 6292 |
signaling process | 1.1841E-3 | 2 | 217 | 2 | 6292 |
signal transmission | 1.1841E-3 | 2 | 217 | 2 | 6292 |
signaling | 1.598E-3 | 2 | 252 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Rho GTPase activator activity | 1.819E-6 | 2 | 9 | 2 | 6292 |
Ras GTPase activator activity | 9.6001E-6 | 2 | 20 | 2 | 6292 |
GTPase activator activity | 2.5061E-5 | 2 | 32 | 2 | 6292 |
small GTPase regulator activity | 8.6451E-5 | 2 | 59 | 2 | 6292 |
enzyme activator activity | 1.1171E-4 | 2 | 67 | 2 | 6292 |
GTPase regulator activity | 1.7614E-4 | 2 | 84 | 2 | 6292 |
nucleoside-triphosphatase regulator activity | 2.256E-4 | 2 | 95 | 2 | 6292 |
enzyme regulator activity | 1.0773E-3 | 2 | 207 | 2 | 6292 |