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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.766533810152]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

mRNA cleavage and polyadenylation specificity factor complex 5.3053E-6 2 15 2 6292
mRNA cleavage factor complex 9.6001E-6 2 20 2 6292
nucleoplasm part 1.5102E-3 2 245 2 6292
nucleoplasm 1.7541E-3 2 264 2 6292
nuclear lumen 5.1728E-3 2 453 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

mRNA polyadenylation 8.6401E-6 2 19 2 6292
mRNA cleavage 1.5158E-5 2 25 2 6292
RNA polyadenylation 1.6421E-5 2 26 2 6292
mRNA 3'-end processing 2.3495E-5 2 31 2 6292
RNA 3'-end processing 4.3504E-5 2 42 2 6292
nucleic acid phosphodiester bond hydrolysis 5.2295E-5 2 46 2 6292
mRNA processing 6.1087E-4 2 156 2 6292
mRNA metabolic process 1.1408E-3 2 213 2 6292
RNA processing 3.6384E-3 2 380 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA binding 3.3934E-3 2 367 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle