From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.805871454652] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
PHO84 |
|
|
|
ZRT1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
integral to plasma membrane | 2.0514E-5 | 2 | 29 | 2 | 6292 |
intrinsic to plasma membrane | 2.6678E-5 | 2 | 33 | 2 | 6292 |
plasma membrane part | 8.0641E-5 | 2 | 57 | 2 | 6292 |
integral to membrane | 1.6363E-3 | 2 | 255 | 2 | 6292 |
intrinsic to membrane | 1.7276E-3 | 2 | 262 | 2 | 6292 |
plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
transition metal ion transport | 4.5626E-5 | 2 | 43 | 2 | 6292 |
metal ion transport | 8.3521E-5 | 2 | 58 | 2 | 6292 |
cation transport | 2.256E-4 | 2 | 95 | 2 | 6292 |
high-affinity zinc ion transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
ion transport | 3.6076E-4 | 2 | 120 | 2 | 6292 |
zinc ion transmembrane transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
manganese ion transport | 2.224E-3 | 2 | 7 | 1 | 6292 |
zinc ion transport | 2.224E-3 | 2 | 7 | 1 | 6292 |
phosphate transport | 3.4937E-3 | 2 | 11 | 1 | 6292 |
inorganic anion transport | 5.7138E-3 | 2 | 18 | 1 | 6292 |
anion transport | 7.9314E-3 | 2 | 25 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.