From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.833925711883] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
MDH3 |
|
|
|
MLS1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
microbody lumen | 4.5979E-6 | 2 | 14 | 2 | 6292 |
peroxisomal matrix | 4.5979E-6 | 2 | 14 | 2 | 6292 |
peroxisomal part | 3.0063E-5 | 2 | 35 | 2 | 6292 |
microbody part | 3.0063E-5 | 2 | 35 | 2 | 6292 |
microbody | 8.3521E-5 | 2 | 58 | 2 | 6292 |
peroxisome | 8.3521E-5 | 2 | 58 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
malate synthase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
L-malate dehydrogenase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
malate dehydrogenase activity | 1.5888E-3 | 2 | 5 | 1 | 6292 |
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | 3.1764E-3 | 2 | 10 | 1 | 6292 |