| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.935573078251] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| LSC1 |
|
|
|
| LSC2 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nucleoid | 8.248E-3 | 2 | 26 | 1 | 6292 |
| mitochondrial nucleoid | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| succinyl-CoA metabolic process | 5.0527E-8 | 2 | 2 | 2 | 6292 |
| tricarboxylic acid cycle | 5.3053E-6 | 2 | 15 | 2 | 6292 |
| acetyl-CoA catabolic process | 5.3053E-6 | 2 | 15 | 2 | 6292 |
| acetyl-CoA metabolic process | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| coenzyme catabolic process | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| cofactor catabolic process | 1.1672E-5 | 2 | 22 | 2 | 6292 |
| aerobic respiration | 1.7194E-4 | 2 | 83 | 2 | 6292 |
| cellular respiration | 2.3525E-4 | 2 | 97 | 2 | 6292 |
| coenzyme metabolic process | 3.6076E-4 | 2 | 120 | 2 | 6292 |
| energy derivation by oxidation of organic compounds | 5.5711E-4 | 2 | 149 | 2 | 6292 |
| cofactor metabolic process | 5.9526E-4 | 2 | 154 | 2 | 6292 |
| generation of precursor metabolites and energy | 9.5571E-4 | 2 | 195 | 2 | 6292 |
| cellular catabolic process | 4.3405E-3 | 2 | 415 | 2 | 6292 |
| catabolic process | 6.2027E-3 | 2 | 496 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| succinate-CoA ligase (ADP-forming) activity | 5.0527E-8 | 2 | 2 | 2 | 6292 |
| succinate-CoA ligase activity | 5.0527E-8 | 2 | 2 | 2 | 6292 |
| CoA-ligase activity | 3.0316E-7 | 2 | 4 | 2 | 6292 |
| acid-thiol ligase activity | 3.0316E-7 | 2 | 4 | 2 | 6292 |
| ligase activity, forming carbon-sulfur bonds | 2.2737E-6 | 2 | 10 | 2 | 6292 |
| ligase activity | 5.6464E-4 | 2 | 150 | 2 | 6292 |