| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.952064005612] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| synaptonemal complex | 5.0527E-7 | 2 | 5 | 2 | 6292 |
| condensed nuclear chromosome | 1.8468E-4 | 2 | 86 | 2 | 6292 |
| condensed chromosome | 2.2085E-4 | 2 | 94 | 2 | 6292 |
| lateral element | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
| nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
| chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| meiosis I | 1.5567E-4 | 2 | 79 | 2 | 6292 |
| M phase of meiotic cell cycle | 6.427E-4 | 2 | 160 | 2 | 6292 |
| meiosis | 6.427E-4 | 2 | 160 | 2 | 6292 |
| meiotic cell cycle | 6.7534E-4 | 2 | 164 | 2 | 6292 |
| regulation of mitotic recombination | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| M phase | 2.1762E-3 | 2 | 294 | 2 | 6292 |
| synaptonemal complex assembly | 2.224E-3 | 2 | 7 | 1 | 6292 |
| synaptonemal complex organization | 2.224E-3 | 2 | 7 | 1 | 6292 |
| DNA topological change | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| cell cycle phase | 3.5621E-3 | 2 | 376 | 2 | 6292 |
| chromosome organization involved in meiosis | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| synapsis | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| regulation of DNA recombination | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| cell cycle process | 6.0534E-3 | 2 | 490 | 2 | 6292 |
| cell cycle | 6.95E-3 | 2 | 525 | 2 | 6292 |
| chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
| regulation of DNA metabolic process | 9.8303E-3 | 2 | 31 | 1 | 6292 |
| DNA strand elongation | 9.8303E-3 | 2 | 31 | 1 | 6292 |
| DNA strand elongation involved in DNA replication | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| DNA topoisomerase (ATP-hydrolyzing) activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| four-way junction DNA binding | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| DNA binding | 1.6492E-3 | 2 | 256 | 2 | 6292 |
| DNA topoisomerase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| DNA secondary structure binding | 2.859E-3 | 2 | 9 | 1 | 6292 |