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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.961713474325]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
NYV1
  • vacuolar membrane
    		•
  • vesicle fusion
    		•
  • receptor signaling protein serine/threonine kinase activity
    		•
    VAM7
  • fungal-type vacuole membrane
    		•
  • vesicle fusion
  • telomere maintenance
  • Golgi to vacuole transport
    		•
  • receptor signaling protein serine/threonine kinase activity
  • phosphatidylinositol-3-phosphate binding
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    vacuolar membrane 3.1973E-4 2 113 2 6292
    vacuolar part 3.6682E-4 2 121 2 6292
    vacuole 1.0983E-3 2 209 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    vesicle fusion 2.0514E-5 2 29 2 6292
    vesicle organization 5.2295E-5 2 46 2 6292
    organelle fusion 7.2304E-5 2 54 2 6292
    membrane fusion 1.1171E-4 2 67 2 6292
    cellular membrane fusion 1.1171E-4 2 67 2 6292
    membrane organization 9.8542E-4 2 198 2 6292
    cellular membrane organization 9.8542E-4 2 198 2 6292
    vesicle-mediated transport 2.9119E-3 2 340 2 6292
    Golgi to vacuole transport 7.6148E-3 2 24 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    receptor signaling protein serine/threonine kinase activity 3.1832E-5 2 36 2 6292
    receptor signaling protein activity 3.3651E-5 2 37 2 6292
    molecular transducer activity 1.5966E-4 2 80 2 6292
    signal transducer activity 1.5966E-4 2 80 2 6292
    protein serine/threonine kinase activity 2.0691E-4 2 91 2 6292
    protein kinase activity 6.1087E-4 2 156 2 6292
    phosphotransferase activity, alcohol group as acceptor 9.8542E-4 2 198 2 6292
    kinase activity 1.2395E-3 2 222 2 6292
    transferase activity, transferring phosphorus-containing groups 4.4459E-3 2 420 2 6292
    phosphatidylinositol-3-phosphate binding 6.0308E-3 2 19 1 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle