| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.0062746644] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| Dbf4-dependent protein kinase complex | 5.0527E-8 | 2 | 2 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| DNA replication initiation | 2.6678E-5 | 2 | 33 | 2 | 6292 |
| DNA-dependent DNA replication | 1.678E-4 | 2 | 82 | 2 | 6292 |
| DNA replication | 3.791E-4 | 2 | 123 | 2 | 6292 |
| phosphorylation | 8.0494E-4 | 2 | 179 | 2 | 6292 |
| phosphorus metabolic process | 1.3191E-3 | 2 | 229 | 2 | 6292 |
| phosphate metabolic process | 1.3191E-3 | 2 | 229 | 2 | 6292 |
| positive regulation of kinase activity | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| positive regulation of transferase activity | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| positive regulation of protein kinase activity | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| positive regulation of molecular function | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| positive regulation of catalytic activity | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| regulation of kinase activity | 8.248E-3 | 2 | 26 | 1 | 6292 |
| regulation of protein kinase activity | 8.248E-3 | 2 | 26 | 1 | 6292 |
| regulation of transferase activity | 8.248E-3 | 2 | 26 | 1 | 6292 |
| DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
| regulation of phosphorylation | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein serine/threonine kinase activator activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| protein kinase activator activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| kinase activator activity | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| DNA replication origin binding | 4.1283E-3 | 2 | 13 | 1 | 6292 |