From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.00657114043] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
telomere cap complex | 2.779E-6 | 2 | 11 | 2 | 6292 |
nuclear telomere cap complex | 2.779E-6 | 2 | 11 | 2 | 6292 |
nuclear chromosome, telomeric region | 1.2783E-5 | 2 | 23 | 2 | 6292 |
chromosome, telomeric region | 1.7735E-5 | 2 | 27 | 2 | 6292 |
protein-DNA complex | 8.0641E-5 | 2 | 57 | 2 | 6292 |
nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
nuclear telomeric heterochromatin | 2.224E-3 | 2 | 7 | 1 | 6292 |
telomeric heterochromatin | 2.224E-3 | 2 | 7 | 1 | 6292 |
nuclear heterochromatin | 2.224E-3 | 2 | 7 | 1 | 6292 |
heterochromatin | 2.224E-3 | 2 | 7 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
telomere capping | 5.0527E-7 | 2 | 5 | 2 | 6292 |
telomere maintenance in response to DNA damage | 3.1786E-4 | 2 | 1 | 1 | 6292 |
protection from non-homologous end joining at telomere | 3.1786E-4 | 2 | 1 | 1 | 6292 |
anatomical structure homeostasis | 2.0592E-3 | 2 | 286 | 2 | 6292 |
telomere organization | 2.0592E-3 | 2 | 286 | 2 | 6292 |
telomere maintenance | 2.0592E-3 | 2 | 286 | 2 | 6292 |
telomere maintenance via telomere lengthening | 4.1283E-3 | 2 | 13 | 1 | 6292 |
telomere maintenance via telomerase | 4.1283E-3 | 2 | 13 | 1 | 6292 |
RNA-dependent DNA replication | 4.1283E-3 | 2 | 13 | 1 | 6292 |
homeostatic process | 4.1951E-3 | 2 | 408 | 2 | 6292 |
regulation of biological quality | 7.6561E-3 | 2 | 551 | 2 | 6292 |
chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
DNA binding | 1.6492E-3 | 2 | 256 | 2 | 6292 |
telomeric DNA binding | 3.811E-3 | 2 | 12 | 1 | 6292 |