From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.2409295736] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
PMA1 |
|
|
|
TRK1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
membrane raft | 1.4147E-6 | 2 | 8 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
monovalent inorganic cation homeostasis | 3.552E-5 | 2 | 38 | 2 | 6292 |
cation homeostasis | 2.974E-4 | 2 | 109 | 2 | 6292 |
chemical homeostasis | 3.791E-4 | 2 | 123 | 2 | 6292 |
ion homeostasis | 3.791E-4 | 2 | 123 | 2 | 6292 |
potassium ion homeostasis | 1.5888E-3 | 2 | 5 | 1 | 6292 |
cellular potassium ion homeostasis | 1.5888E-3 | 2 | 5 | 1 | 6292 |
homeostatic process | 4.1951E-3 | 2 | 408 | 2 | 6292 |
metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
cellular metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
proton transport | 7.6148E-3 | 2 | 24 | 1 | 6292 |
hydrogen transport | 7.6148E-3 | 2 | 24 | 1 | 6292 |
regulation of biological quality | 7.6561E-3 | 2 | 551 | 2 | 6292 |
regulation of pH | 9.1975E-3 | 2 | 29 | 1 | 6292 |
monovalent inorganic cation transport | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
monovalent inorganic cation transmembrane transporter activity | 8.6451E-5 | 2 | 59 | 2 | 6292 |
inorganic cation transmembrane transporter activity | 2.5516E-4 | 2 | 101 | 2 | 6292 |
cation transmembrane transporter activity | 3.4879E-4 | 2 | 118 | 2 | 6292 |
ion transmembrane transporter activity | 5.3483E-4 | 2 | 146 | 2 | 6292 |
hydrogen-exporting ATPase activity, phosphorylative mechanism | 6.3568E-4 | 2 | 2 | 1 | 6292 |
potassium ion transmembrane transporter activity | 1.5888E-3 | 2 | 5 | 1 | 6292 |
substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 4.4455E-3 | 2 | 14 | 1 | 6292 |
ATPase activity, coupled to transmembrane movement of ions | 9.1975E-3 | 2 | 29 | 1 | 6292 |