From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.057] [SVM Score: 0.529449716974] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
SNF5 |
|
|
|
STH1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
chromatin remodeling complex | 2.4511E-4 | 2 | 99 | 2 | 6292 |
SWI/SNF complex | 4.1283E-3 | 2 | 13 | 1 | 6292 |
SWI/SNF-type complex | 4.1283E-3 | 2 | 13 | 1 | 6292 |
RSC complex | 6.3477E-3 | 2 | 20 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
double-strand break repair | 8.0641E-5 | 2 | 57 | 2 | 6292 |
chromatin remodeling | 1.151E-4 | 2 | 68 | 2 | 6292 |
chromatin remodeling at centromere | 6.3568E-4 | 2 | 2 | 1 | 6292 |
chromatin modification | 7.0879E-4 | 2 | 168 | 2 | 6292 |
DNA repair | 9.2646E-4 | 2 | 192 | 2 | 6292 |
chromatin organization | 1.036E-3 | 2 | 203 | 2 | 6292 |
response to DNA damage stimulus | 1.4011E-3 | 2 | 236 | 2 | 6292 |
cellular response to stress | 2.1173E-3 | 2 | 290 | 2 | 6292 |
cellular response to stimulus | 3.6193E-3 | 2 | 379 | 2 | 6292 |
response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
ATP-dependent chromatin remodeling | 8.248E-3 | 2 | 26 | 1 | 6292 |
DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |