| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.803598668163] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nucleotide-excision repair factor 3 complex | 2.224E-3 | 2 | 7 | 1 | 6292 |
| holo TFIIH complex | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| nucleotide-excision repair complex | 6.6645E-3 | 2 | 21 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nucleotide-excision repair, DNA incision, 3'-to lesion | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| nucleotide-excision repair, DNA incision | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| regulation of transcription from RNA polymerase II promoter, mitotic | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| negative regulation of transcription from RNA polymerase II promoter, mitotic | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| regulation of transcription, mitotic | 2.859E-3 | 2 | 9 | 1 | 6292 |
| negative regulation of transcription, mitotic | 2.859E-3 | 2 | 9 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| single-stranded DNA specific endodeoxyribonuclease activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
| endodeoxyribonuclease activity | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| cyclin-dependent protein kinase regulator activity | 8.248E-3 | 2 | 26 | 1 | 6292 |
| deoxyribonuclease activity | 9.1975E-3 | 2 | 29 | 1 | 6292 |