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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.999136576633]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
HHF1, HHF2
  • nucleus
  • nucleoplasm part
  • nuclear nucleosome
  • chromosome
  • replication fork protection complex
  • chromatin remodeling complex
  • nucleosome
  • histone acetyltransferase complex
  • nucleoplasm
    		•
  • histone H3-K79 methylation
  • DNA repair
  • negative regulation of transcription
  • chromatin assembly or disassembly
  • positive regulation of transcription
  • nucleosome assembly
    		•
  • DNA binding
    		•
    HTA1
  • nuclear nucleosome
    		•
  • DNA repair
  • chromatin assembly or disassembly
    		•
  • DNA binding
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    nuclear nucleosome 3.3348E-6 2 12 2 6292
    nucleosome 3.3348E-6 2 12 2 6292
    protein-DNA complex 8.0641E-5 2 57 2 6292
    nuclear chromatin 1.3278E-4 2 73 2 6292
    chromatin 1.4784E-4 2 77 2 6292
    replication fork protection complex 6.3568E-4 2 2 1 6292
    nuclear chromosome part 9.0721E-4 2 190 2 6292
    nuclear chromosome 1.3075E-3 2 228 2 6292
    chromosomal part 1.413E-3 2 237 2 6292
    chromosome 1.8898E-3 2 274 2 6292
    nuclear replication fork 6.3477E-3 2 20 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    chromatin assembly or disassembly 3.0063E-5 2 35 2 6292
    histone H3-K79 methylation 3.1786E-4 2 1 1 6292
    histone lysine methylation 6.3568E-4 2 2 1 6292
    DNA repair 9.2646E-4 2 192 2 6292
    chromatin organization 1.036E-3 2 203 2 6292
    response to DNA damage stimulus 1.4011E-3 2 236 2 6292
    cellular response to stress 2.1173E-3 2 290 2 6292
    cellular response to stimulus 3.6193E-3 2 379 2 6292
    nucleosome assembly 5.0798E-3 2 16 1 6292
    chromatin assembly 6.0308E-3 2 19 1 6292
    response to stress 6.2277E-3 2 497 2 6292
    histone methylation 6.3477E-3 2 20 1 6292
    protein amino acid alkylation 7.6148E-3 2 24 1 6292
    protein amino acid methylation 7.6148E-3 2 24 1 6292
    chromosome organization 7.7677E-3 2 555 2 6292
    DNA metabolic process 8.631E-3 2 585 2 6292
    nucleosome organization 9.1975E-3 2 29 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    DNA binding 1.6492E-3 2 256 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle