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View Protein Complex Details

Complex Overview

From Publication: Ho Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 2002 Jan 10;415(6868):180-3.
Notes: This molecular complex record represents a population of complexes co-purified by immunoprecipitation of FLAG-tagged Ino4. The topolgies of protein complexes in this experiment are unknown.
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear nucleosome 2.953E-7 8 12 3 6292
nucleosome 2.953E-7 8 12 3 6292
protein-DNA complex 3.8233E-5 8 57 3 6292
nuclear chromatin 8.0492E-5 8 73 3 6292
chromatin 9.4442E-5 8 77 3 6292
nuclear chromosome part 1.357E-3 8 190 3 6292
nuclear chromosome 2.2974E-3 8 228 3 6292
replication fork protection complex 2.5415E-3 8 2 1 6292
chromosomal part 2.5676E-3 8 237 3 6292
chromosome 3.8858E-3 8 274 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin assembly or disassembly 8.6654E-6 8 35 3 6292
histone H3-K79 methylation 1.2715E-3 8 1 1 6292
chromatin organization 1.6437E-3 8 203 3 6292
histone lysine methylation 2.5415E-3 8 2 1 6292
positive regulation of transcription 8.1985E-3 8 112 2 6292
positive regulation of gene expression 8.1985E-3 8 112 2 6292
positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 9.0698E-3 8 118 2 6292
positive regulation of nitrogen compound metabolic process 9.0698E-3 8 118 2 6292
positive regulation of macromolecule biosynthetic process 9.0698E-3 8 118 2 6292
positive regulation of biosynthetic process 9.5206E-3 8 121 2 6292
positive regulation of cellular biosynthetic process 9.5206E-3 8 121 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA binding 1.6466E-4 8 256 4 6292
nucleic acid binding 5.58E-4 8 666 5 6292
binding 1.4278E-3 8 1294 6 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle