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View Protein Complex Details

Complex Overview

From Publication: Ho Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 2002 Jan 10;415(6868):180-3.
Notes: This molecular complex record represents a population of complexes co-purified by immunoprecipitation of FLAG-tagged Rsp5. The topolgies of protein complexes in this experiment are unknown.
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ubiquitin ligase complex 2.7138E-4 4 43 2 6292
plasma membrane 2.9613E-4 4 268 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein polyubiquitination 6.3408E-5 4 21 2 6292
protein monoubiquitination 7.6359E-5 4 23 2 6292
protein ubiquitination 6.2218E-4 4 65 2 6292
farnesyl diphosphate biosynthetic process, mevalonate pathway 6.3573E-4 4 1 1 6292
post-translational protein modification 6.9425E-4 4 357 3 6292
protein modification by small protein conjugation 1.0884E-3 4 86 2 6292
terpenoid metabolic process 1.2712E-3 4 2 1 6292
terpenoid biosynthetic process 1.2712E-3 4 2 1 6292
farnesyl diphosphate biosynthetic process 1.2712E-3 4 2 1 6292
farnesyl diphosphate metabolic process 1.2712E-3 4 2 1 6292
protein modification process 1.8668E-3 4 499 3 6292
prenol metabolic process 1.9063E-3 4 3 1 6292
prenol biosynthetic process 1.9063E-3 4 3 1 6292
polyprenol metabolic process 1.9063E-3 4 3 1 6292
polyprenol biosynthetic process 1.9063E-3 4 3 1 6292
protein modification by small protein conjugation or removal 1.9066E-3 4 114 2 6292
macromolecule modification 2.7453E-3 4 569 3 6292
secondary metabolic process 3.1756E-3 4 5 1 6292
isoprenoid metabolic process 3.8098E-3 4 6 1 6292
isoprenoid biosynthetic process 3.8098E-3 4 6 1 6292
manganese ion transport 4.4437E-3 4 7 1 6292
phosphate transport 6.9763E-3 4 11 1 6292
DNA damage response, signal transduction 8.8726E-3 4 14 1 6292
DNA damage checkpoint 8.8726E-3 4 14 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

inorganic phosphate transmembrane transporter activity 3.1756E-3 4 5 1 6292
manganese ion transmembrane transporter activity 3.8098E-3 4 6 1 6292
ubiquitin binding 4.4437E-3 4 7 1 6292
small conjugating protein binding 5.0773E-3 4 8 1 6292
phosphate transmembrane transporter activity 5.7106E-3 4 9 1 6292
inorganic anion transmembrane transporter activity 9.5041E-3 4 15 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle