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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

THO complex 3.8553E-10 4 4 3 6292
nuclear part 9.4015E-4 4 1103 4 6292
heterogeneous nuclear ribonucleoprotein complex 1.9063E-3 4 3 1 6292
macromolecular complex 4.5471E-3 4 1635 4 6292
Cdc73/Paf1 complex 5.0773E-3 4 8 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

mRNA export from nucleus 1.2482E-8 4 68 4 6292
mRNA transport 1.2482E-8 4 68 4 6292
RNA export from nucleus 2.4242E-8 4 80 4 6292
RNA transport 2.5501E-8 4 81 4 6292
nucleic acid transport 2.5501E-8 4 81 4 6292
establishment of RNA localization 2.5501E-8 4 81 4 6292
RNA localization 4.2827E-8 4 92 4 6292
nucleobase, nucleoside, nucleotide and nucleic acid transport 5.0917E-8 4 96 4 6292
nuclear export 6.7767E-8 4 103 4 6292
nuclear transport 1.741E-7 4 130 4 6292
nucleocytoplasmic transport 1.741E-7 4 130 4 6292
RNA elongation from RNA polymerase II promoter 8.7717E-7 4 39 3 6292
RNA elongation 1.361E-6 4 45 3 6292
macromolecule localization 1.5626E-5 4 397 4 6292
DNA recombination 2.2873E-5 4 114 3 6292
intracellular transport 5.908E-5 4 553 4 6292
establishment of localization in cell 8.1397E-5 4 599 4 6292
cellular localization 1.0815E-4 4 643 4 6292
transcription from RNA polymerase II promoter 5.749E-4 4 335 3 6292
transport 6.2722E-4 4 997 4 6292
establishment of localization 6.5541E-4 4 1008 4 6292
localization 8.0172E-4 4 1060 4 6292
transcription, DNA-dependent 1.9112E-3 4 503 3 6292
RNA biosynthetic process 1.9676E-3 4 508 3 6292
transcription 2.5116E-3 4 552 3 6292
DNA metabolic process 2.9778E-3 4 585 3 6292
poly(A)+ mRNA export from nucleus 4.4437E-3 4 7 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleic acid binding 1.2452E-4 4 666 4 6292
binding 1.7823E-3 4 1294 4 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle