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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription elongation factor complex 1.1742E-15 6 23 6 6292
nucleoplasm part 3.2848E-9 6 245 6 6292
nucleoplasm 5.1651E-9 6 264 6 6292
nuclear lumen 1.3504E-7 6 453 6 6292
organelle lumen 1.3052E-6 6 660 6 6292
intracellular organelle lumen 1.3052E-6 6 660 6 6292
membrane-enclosed lumen 1.8602E-6 6 700 6 6292
nuclear part 2.8697E-5 6 1103 6 6292
protein complex 3.4445E-5 6 1137 6 6292
macromolecular complex 3.0579E-4 6 1635 6 6292
nucleus 1.1592E-3 6 2041 6 6292
organelle part 2.2664E-3 6 2282 6 6292
intracellular organelle part 2.2664E-3 6 2282 6 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

tRNA modification 2.0948E-13 6 51 6 6292
RNA modification 1.5251E-12 6 70 6 6292
tRNA processing 4.3903E-12 6 83 6 6292
tRNA metabolic process 4.2487E-11 6 120 6 6292
ncRNA processing 1.4872E-9 6 215 6 6292
regulation of transcription from RNA polymerase II promoter 2.1238E-9 6 228 6 6292
ncRNA metabolic process 4.3891E-9 6 257 6 6292
transcription from RNA polymerase II promoter 2.1828E-8 6 335 6 6292
regulation of transcription, DNA-dependent 3.2607E-8 6 358 6 6292
regulation of RNA metabolic process 3.5457E-8 6 363 6 6292
RNA processing 4.675E-8 6 380 6 6292
regulation of transcription 4.9802E-8 6 384 6 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 7.9584E-8 6 415 6 6292
regulation of nitrogen compound metabolic process 8.0748E-8 6 416 6 6292
regulation of gene expression 1.2127E-7 6 445 6 6292
regulation of macromolecule biosynthetic process 1.4052E-7 6 456 6 6292
regulation of cellular biosynthetic process 1.7302E-7 6 472 6 6292
regulation of biosynthetic process 1.7524E-7 6 473 6 6292
regulation of macromolecule metabolic process 2.1155E-7 6 488 6 6292
transcription, DNA-dependent 2.5393E-7 6 503 6 6292
RNA biosynthetic process 2.6954E-7 6 508 6 6292
regulation of primary metabolic process 2.8931E-7 6 514 6 6292
regulation of cellular metabolic process 3.7247E-7 6 536 6 6292
regulation of metabolic process 4.21E-7 6 547 6 6292
transcription 4.4473E-7 6 552 6 6292
macromolecule modification 5.3394E-7 6 569 6 6292
regulation of cellular process 4.0325E-6 6 796 6 6292
regulation of biological process 4.9653E-6 6 824 6 6292
protein urmylation 1.1349E-5 6 6 2 6292
RNA metabolic process 1.1988E-5 6 954 6 6292
cellular macromolecule biosynthetic process 4.4618E-5 6 1187 6 6292
macromolecule biosynthetic process 4.5072E-5 6 1189 6 6292
biological regulation 5.0826E-5 6 1213 6 6292
gene expression 7.1216E-5 6 1283 6 6292
nucleic acid metabolic process 1.283E-4 6 1415 6 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 2.3599E-4 6 1566 6 6292
cellular biosynthetic process 2.3689E-4 6 1567 6 6292
biosynthetic process 2.7052E-4 6 1602 6 6292
cellular nitrogen compound metabolic process 4.9256E-4 6 1770 6 6292
nitrogen compound metabolic process 5.2873E-4 6 1791 6 6292
cellular macromolecule metabolic process 2.2844E-3 6 2285 6 6292
protein modification by small protein conjugation 2.6729E-3 6 86 2 6292
macromolecule metabolic process 2.6967E-3 6 2349 6 6292
protein modification by small protein conjugation or removal 4.6544E-3 6 114 2 6292
primary metabolic process 9.4808E-3 6 2896 6 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle