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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytosolic ribosome 1.9761E-8 7 101 5 6292
ribonucleoprotein complex 2.338E-8 7 514 7 6292
cytosolic part 5.1422E-8 7 122 5 6292
ribosomal subunit 3.9497E-7 7 183 5 6292
cytosol 3.5275E-6 7 284 5 6292
ribosome 3.9127E-6 7 290 5 6292
preribosome 4.973E-6 7 34 3 6292
cytosolic small ribosomal subunit 6.9973E-6 7 38 3 6292
small ribosomal subunit 5.0731E-5 7 73 3 6292
macromolecular complex 7.9244E-5 7 1635 7 6292
90S preribosome 1.4316E-4 7 17 2 6292
non-membrane-bounded organelle 1.3072E-3 7 959 5 6292
intracellular non-membrane-bounded organelle 1.3072E-3 7 959 5 6292
cytosolic large ribosomal subunit 1.8211E-3 7 60 2 6292
large ribosomal subunit 6.0062E-3 7 110 2 6292
preribosome, small subunit precursor 6.6592E-3 7 6 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

translation 2.5814E-9 7 376 7 6292
cellular protein metabolic process 4.1538E-6 7 1074 7 6292
protein metabolic process 6.1593E-6 7 1136 7 6292
cellular macromolecule biosynthetic process 8.3828E-6 7 1187 7 6292
macromolecule biosynthetic process 8.4824E-6 7 1189 7 6292
gene expression 1.4468E-5 7 1283 7 6292
ribosomal subunit assembly 2.1584E-5 7 55 3 6292
ribosome assembly 3.4131E-5 7 64 3 6292
organelle assembly 4.2818E-5 7 69 3 6292
cellular biosynthetic process 5.8828E-5 7 1567 7 6292
biosynthetic process 6.8686E-5 7 1602 7 6292
ribosomal small subunit assembly 9.5944E-5 7 14 2 6292
ribonucleoprotein complex assembly 1.015E-4 7 92 3 6292
ribosomal small subunit biogenesis 3.4048E-4 7 26 2 6292
cellular macromolecular complex assembly 7.6476E-4 7 182 3 6292
cellular macromolecule metabolic process 8.282E-4 7 2285 7 6292
macromolecule metabolic process 1.0051E-3 7 2349 7 6292
regulation of translation 1.6447E-3 7 57 2 6292
posttranscriptional regulation of gene expression 1.8819E-3 7 61 2 6292
cellular macromolecular complex subunit organization 2.1334E-3 7 259 3 6292
regulation of cellular protein metabolic process 2.3339E-3 7 68 2 6292
macromolecular complex assembly 2.6978E-3 7 281 3 6292
regulation of protein metabolic process 2.7584E-3 7 74 2 6292
primary metabolic process 4.3588E-3 7 2896 7 6292
ribosome biogenesis 4.8878E-3 7 346 3 6292
macromolecular complex subunit organization 5.3413E-3 7 357 3 6292
cellular metabolic process 6.026E-3 7 3033 7 6292
ribonucleoprotein complex biogenesis 6.0923E-3 7 374 3 6292
cellular component assembly 6.6113E-3 7 385 3 6292
metabolic process 7.9792E-3 7 3157 7 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 4.4752E-11 7 212 7 6292
structural molecule activity 1.2424E-9 7 339 7 6292
rRNA binding 1.2639E-4 7 16 2 6292
RNA binding 5.7756E-3 7 367 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle