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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

TRAMP complex 3.8553E-10 4 4 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

tRNA catabolic process 3.8553E-10 4 4 3 6292
ncRNA polyadenylation 1.9272E-9 4 6 3 6292
ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process 1.9272E-9 4 6 3 6292
rRNA catabolic process 1.9272E-9 4 6 3 6292
ncRNA catabolic process 1.9272E-9 4 6 3 6292
polyadenylation-dependent RNA catabolic process 5.3949E-9 4 8 3 6292
polyadenylation-dependent ncRNA catabolic process 5.3949E-9 4 8 3 6292
ncRNA 3'-end processing 2.1184E-8 4 12 3 6292
RNA polyadenylation 2.4994E-7 4 26 3 6292
RNA 3'-end processing 1.1015E-6 4 42 3 6292
snRNA catabolic process 3.0297E-6 4 5 2 6292
snoRNA catabolic process 3.0297E-6 4 5 2 6292
RNA catabolic process 7.847E-6 4 80 3 6292
snRNA metabolic process 1.0898E-5 4 9 2 6292
tRNA metabolic process 2.6694E-5 4 120 3 6292
rRNA metabolic process 3.9765E-5 4 137 3 6292
snoRNA metabolic process 4.6226E-5 4 18 2 6292
modification-dependent macromolecule catabolic process 6.8238E-5 4 164 3 6292
ncRNA processing 1.5347E-4 4 215 3 6292
ncRNA metabolic process 2.6137E-4 4 257 3 6292
cellular macromolecule catabolic process 2.8637E-4 4 265 3 6292
macromolecule catabolic process 3.9009E-4 4 294 3 6292
RNA metabolic process 5.2568E-4 4 954 4 6292
mRNA transport 6.8098E-4 4 68 2 6292
mRNA export from nucleus 6.8098E-4 4 68 2 6292
RNA processing 8.3529E-4 4 380 3 6292
RNA export from nucleus 9.4222E-4 4 80 2 6292
RNA transport 9.6587E-4 4 81 2 6292
nucleic acid transport 9.6587E-4 4 81 2 6292
establishment of RNA localization 9.6587E-4 4 81 2 6292
cellular catabolic process 1.084E-3 4 415 3 6292
RNA localization 1.2449E-3 4 92 2 6292
nucleobase, nucleoside, nucleotide and nucleic acid transport 1.355E-3 4 96 2 6292
nuclear export 1.5586E-3 4 103 2 6292
gene expression 1.7224E-3 4 1283 4 6292
catabolic process 1.834E-3 4 496 3 6292
nuclear transport 2.4736E-3 4 130 2 6292
nucleocytoplasmic transport 2.4736E-3 4 130 2 6292
nucleic acid metabolic process 2.5494E-3 4 1415 4 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3.8261E-3 4 1566 4 6292
DNA topological change 5.0773E-3 4 8 1 6292
termination of RNA polymerase II transcription, poly(A)-independent 5.7106E-3 4 9 1 6292
cellular nitrogen compound metabolic process 6.2471E-3 4 1770 4 6292
nitrogen compound metabolic process 6.5492E-3 4 1791 4 6292
mitotic chromosome condensation 6.9763E-3 4 11 1 6292
chromosome condensation 8.2408E-3 4 13 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

polynucleotide adenylyltransferase activity 4.5436E-6 4 6 2 6292
adenylyltransferase activity 2.3591E-5 4 13 2 6292
poly(A) RNA binding 3.1756E-3 4 5 1 6292
single-stranded RNA binding 3.1756E-3 4 5 1 6292
poly-purine tract binding 3.1756E-3 4 5 1 6292
nucleotidyltransferase activity 4.1046E-3 4 168 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle