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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

U6 snRNP 7.9298E-8 6 11 3 6292
cytoplasmic mRNA processing body 2.1836E-7 6 15 3 6292
ribonucleoprotein complex 2.8931E-7 6 514 6 6292
U4/U6 x U5 tri-snRNP complex 2.3659E-6 6 32 3 6292
small nuclear ribonucleoprotein complex 1.8732E-5 6 63 3 6292
small nucleolar ribonucleoprotein complex 2.8041E-5 6 72 3 6292
macromolecular complex 3.0579E-4 6 1635 6 6292
nucleolus 6.8999E-4 6 211 3 6292
mRNA cap binding complex 2.8585E-3 6 3 1 6292
RNA cap binding complex 5.7102E-3 6 6 1 6292
nuclear lumen 6.2906E-3 6 453 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

mRNA catabolic process 1.3944E-12 6 69 6 6292
RNA catabolic process 3.4953E-12 6 80 6 6292
mRNA metabolic process 1.4052E-9 6 213 6 6292
cellular macromolecule catabolic process 5.2847E-9 6 265 6 6292
macromolecule catabolic process 9.9104E-9 6 294 6 6292
cellular catabolic process 7.9584E-8 6 415 6 6292
catabolic process 2.3335E-7 6 496 6 6292
RNA metabolic process 1.1988E-5 6 954 6 6292
deadenylation-dependent decapping of nuclear-transcribed mRNA 4.1526E-5 6 11 2 6292
nuclear mRNA splicing, via spliceosome 7.3032E-5 6 99 3 6292
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 7.5263E-5 6 100 3 6292
RNA splicing, via transesterification reactions 9.2151E-5 6 107 3 6292
nucleic acid metabolic process 1.283E-4 6 1415 6 6292
RNA splicing 1.7238E-4 6 132 3 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 2.3599E-4 6 1566 6 6292
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2.6322E-4 6 27 2 6292
mRNA processing 2.8306E-4 6 156 3 6292
cellular nitrogen compound metabolic process 4.9256E-4 6 1770 6 6292
nuclear-transcribed mRNA catabolic process 5.2472E-4 6 38 2 6292
nitrogen compound metabolic process 5.2873E-4 6 1791 6 6292
cellular macromolecule metabolic process 2.2844E-3 6 2285 6 6292
macromolecule metabolic process 2.6967E-3 6 2349 6 6292
RNA processing 3.811E-3 6 380 3 6292
traversing start control point of mitotic cell cycle 5.7102E-3 6 6 1 6292
response to exogenous dsRNA 6.6592E-3 6 7 1 6292
response to dsRNA 6.6592E-3 6 7 1 6292
primary metabolic process 9.4808E-3 6 2896 6 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA binding 1.5555E-4 6 367 4 6292
nucleic acid binding 1.5669E-3 6 666 4 6292
RNA cap binding 1.9064E-3 6 2 1 6292
5'-3' exoribonuclease activity 1.9064E-3 6 2 1 6292
recombinase activity 3.8098E-3 6 4 1 6292
5'-3' exonuclease activity 5.7102E-3 6 6 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle