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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 10 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
IMD1
RPL10
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • ribosomal large subunit assembly
  • translation
  • structural constituent of ribosome
  • RPL15A
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • translation
  • RNA binding
  • structural constituent of ribosome
  • RPL4B
  • cytoplasm
  • translation
  • structural constituent of ribosome
  • RPL5
  • ribosomal large subunit assembly
  • translation
  • RNA binding
  • structural constituent of ribosome
  • RPP0
  • ribosomal large subunit assembly
  • translational elongation
  • translation
  • structural constituent of ribosome
  • RPS11A, RPS11B
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • ribosome
  • 90S preribosome
  • intracellular
  • regulation of translation
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosomal small subunit assembly
  • translation
  • RNA binding
  • structural constituent of ribosome
  • rRNA binding
  • RPS1B
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic small ribosomal subunit
  • ribosome
  • 90S preribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • RPS3
  • preribosome, small subunit precursor
  • response to DNA damage stimulus
  • translation
  • structural constituent of ribosome
  • UTP22
  • nucleus
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosome biogenesis
  • rRNA processing
  • snoRNA binding
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    cytosolic ribosome 1.2199E-5 10 101 4 6292
    preribosome 1.6862E-5 10 34 3 6292
    cytosolic part 2.5822E-5 10 122 4 6292
    ribonucleoprotein complex 4.562E-5 10 514 6 6292
    ribosomal subunit 1.2678E-4 10 183 4 6292
    90S preribosome 3.0531E-4 10 17 2 6292
    cytosol 6.8764E-4 10 284 4 6292
    ribosome 7.4443E-4 10 290 4 6292
    cytosolic small ribosomal subunit 1.5503E-3 10 38 2 6292
    cytosolic large ribosomal subunit 3.8312E-3 10 60 2 6292
    small ribosomal subunit 5.6259E-3 10 73 2 6292
    preribosome, small subunit precursor 9.5019E-3 10 6 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    translation 6.1286E-9 10 376 8 6292
    ribosomal subunit assembly 1.0557E-6 10 55 4 6292
    ribosome assembly 1.9533E-6 10 64 4 6292
    organelle assembly 2.6475E-6 10 69 4 6292
    gene expression 4.872E-6 10 1283 9 6292
    ribonucleoprotein complex assembly 8.4067E-6 10 92 4 6292
    cellular protein metabolic process 2.2894E-5 10 1074 8 6292
    ribosomal large subunit assembly 2.9863E-5 10 41 3 6292
    protein metabolic process 3.5183E-5 10 1136 8 6292
    cellular macromolecule biosynthetic process 4.9194E-5 10 1187 8 6292
    macromolecule biosynthetic process 4.9829E-5 10 1189 8 6292
    ribosome biogenesis 9.789E-5 10 346 5 6292
    ribosomal large subunit biogenesis 1.1993E-4 10 65 3 6292
    cellular macromolecular complex assembly 1.2411E-4 10 182 4 6292
    ribonucleoprotein complex biogenesis 1.4199E-4 10 374 5 6292
    maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.757E-4 10 13 2 6292
    cellular biosynthetic process 3.9961E-4 10 1567 8 6292
    biosynthetic process 4.7103E-4 10 1602 8 6292
    cellular macromolecular complex subunit organization 4.8407E-4 10 259 4 6292
    macromolecular complex assembly 6.6045E-4 10 281 4 6292
    cellular macromolecule metabolic process 7.3309E-4 10 2285 9 6292
    macromolecule metabolic process 9.2762E-4 10 2349 9 6292
    macromolecular complex subunit organization 1.628E-3 10 357 4 6292
    cellular component assembly 2.1564E-3 10 385 4 6292
    cellular component biogenesis 2.5231E-3 10 694 5 6292
    maturation of SSU-rRNA 3.7066E-3 10 59 2 6292
    primary metabolic process 5.4001E-3 10 2896 9 6292
    cellular metabolic process 7.9165E-3 10 3033 9 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    structural constituent of ribosome 6.195E-11 10 212 8 6292
    structural molecule activity 2.6832E-9 10 339 8 6292
    RNA binding 1.8047E-3 10 367 4 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle