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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 13 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
ABF2
  • mitochondrial chromosome
  • mitochondrion
  • mitochondrial nucleoid
  • mitochondrion inheritance
  • mitochondrial genome maintenance
  • DNA binding
  • DNA bending activity
  • NHP6A
  • nuclear chromatin
  • chromatin remodeling
  • chromatin organization
  • positive regulation of transcription from RNA polymerase II promoter
  • regulation of transcription from RNA polymerase III promoter
  • regulation of transcription from RNA polymerase II promoter
  • chromatin binding
  • RPL11B
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • ribosomal large subunit assembly
  • translation
  • structural constituent of ribosome
  • RPL17A
  • cytoplasm
  • translation
  • structural constituent of ribosome
  • RPL17B
  • ribonucleoprotein complex
  • cytoplasm
  • large ribosomal subunit
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • RPL20A
  • translation
  • structural constituent of ribosome
  • RPL2A, RPL2B
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • regulation of translation
  • response to drug
  • translation
  • RNA binding
  • structural constituent of ribosome
  • rRNA binding
  • RPL36A
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • translation
  • RNA binding
  • structural constituent of ribosome
  • RPL4A
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • RPS14A
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • telomere maintenance
  • ribosomal small subunit assembly
  • translation
  • RNA binding
  • structural constituent of ribosome
  • RPS17B
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • ribosome
  • intracellular
  • telomere maintenance
  • ribosomal small subunit assembly
  • translation
  • structural constituent of ribosome
  • RPS30B, RPS30A
  • stress granule
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic small ribosomal subunit
  • ribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • RPS5
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • small ribosomal subunit
  • 90S preribosome
  • ribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    cytosolic ribosome 4.0135E-12 13 101 8 6292
    cytosolic part 1.8837E-11 13 122 8 6292
    ribosomal subunit 5.0006E-10 13 183 8 6292
    cytosol 1.6525E-8 13 284 8 6292
    ribosome 1.9488E-8 13 290 8 6292
    ribonucleoprotein complex 8.0439E-8 13 514 9 6292
    cytosolic large ribosomal subunit 8.0799E-8 13 60 5 6292
    non-membrane-bounded organelle 1.1943E-6 13 959 10 6292
    intracellular non-membrane-bounded organelle 1.1943E-6 13 959 10 6292
    large ribosomal subunit 1.7164E-6 13 110 5 6292
    cytosolic small ribosomal subunit 5.5762E-5 13 38 3 6292
    small ribosomal subunit 3.9426E-4 13 73 3 6292
    macromolecular complex 1.3229E-3 13 1635 9 6292
    stress granule 2.0661E-3 13 1 1 6292
    intracellular organelle part 3.3831E-3 13 2282 10 6292
    organelle part 3.3831E-3 13 2282 10 6292
    mitochondrial chromosome 4.1283E-3 13 2 1 6292
    cytoplasmic chromosome 4.1283E-3 13 2 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    translation 2.1116E-12 13 376 11 6292
    cellular macromolecule biosynthetic process 2.0887E-8 13 1187 12 6292
    macromolecule biosynthetic process 2.1308E-8 13 1189 12 6292
    gene expression 5.2425E-8 13 1283 12 6292
    cellular protein metabolic process 1.9126E-7 13 1074 11 6292
    protein metabolic process 3.4803E-7 13 1136 11 6292
    cellular biosynthetic process 5.5313E-7 13 1567 12 6292
    biosynthetic process 7.1688E-7 13 1602 12 6292
    cellular macromolecule metabolic process 4.4721E-5 13 2285 12 6292
    macromolecule metabolic process 6.1467E-5 13 2349 12 6292
    ribosomal subunit assembly 1.6993E-4 13 55 3 6292
    ribosome assembly 2.6697E-4 13 64 3 6292
    organelle assembly 3.3372E-4 13 69 3 6292
    ribosomal small subunit assembly 3.5365E-4 13 14 2 6292
    primary metabolic process 6.6865E-4 13 2896 12 6292
    ribonucleoprotein complex assembly 7.7815E-4 13 92 3 6292
    cellular metabolic process 1.1248E-3 13 3033 12 6292
    ribosomal small subunit biogenesis 1.2455E-3 13 26 2 6292
    metabolic process 1.7612E-3 13 3157 12 6292
    cellular macromolecular complex assembly 5.4966E-3 13 182 3 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    structural constituent of ribosome 3.618E-15 13 212 11 6292
    structural molecule activity 6.7238E-13 13 339 11 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle