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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

90S preribosome 3.261E-7 6 17 3 6292
preribosome 2.8523E-6 6 34 3 6292
cytosolic small ribosomal subunit 4.0152E-6 6 38 3 6292
ribonucleoprotein complex 1.9994E-5 6 514 5 6292
small ribosomal subunit 2.9233E-5 6 73 3 6292
cytosolic ribosome 7.7539E-5 6 101 3 6292
cytosolic part 1.3633E-4 6 122 3 6292
ribosomal subunit 4.5377E-4 6 183 3 6292
cytosol 1.644E-3 6 284 3 6292
ribosome 1.747E-3 6 290 3 6292
macromolecular complex 5.5477E-3 6 1635 5 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

regulation of translation 1.3832E-5 6 57 3 6292
posttranscriptional regulation of gene expression 1.6989E-5 6 61 3 6292
regulation of cellular protein metabolic process 2.3597E-5 6 68 3 6292
regulation of protein metabolic process 3.0457E-5 6 74 3 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 5.8841E-5 6 13 2 6292
translation 1.7103E-4 6 376 4 6292
maturation of SSU-rRNA 1.2657E-3 6 59 2 6292
ribosome biogenesis 2.9111E-3 6 346 3 6292
regulation of cellular process 3.0881E-3 6 796 4 6292
regulation of biological process 3.5191E-3 6 824 4 6292
ribonucleoprotein complex biogenesis 3.641E-3 6 374 3 6292
traversing start control point of mitotic cell cycle 5.7102E-3 6 6 1 6292
rRNA processing 5.8384E-3 6 128 2 6292
regulation of gene expression 5.9803E-3 6 445 3 6292
regulation of macromolecule biosynthetic process 6.4094E-3 6 456 3 6292
response to exogenous dsRNA 6.6592E-3 6 7 1 6292
response to dsRNA 6.6592E-3 6 7 1 6292
rRNA metabolic process 6.6661E-3 6 137 2 6292
regulation of cellular biosynthetic process 7.0671E-3 6 472 3 6292
regulation of biosynthetic process 7.1095E-3 6 473 3 6292
regulation of macromolecule metabolic process 7.7652E-3 6 488 3 6292
regulation of primary metabolic process 8.9879E-3 6 514 3 6292
cellular protein metabolic process 9.4683E-3 6 1074 4 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA binding 9.041E-5 6 16 2 6292
structural constituent of ribosome 6.9964E-4 6 212 3 6292
5'-3' exoribonuclease activity 1.9064E-3 6 2 1 6292
structural molecule activity 2.7446E-3 6 339 3 6292
IMP dehydrogenase activity 2.8585E-3 6 3 1 6292
RNA binding 3.4488E-3 6 367 3 6292
recombinase activity 3.8098E-3 6 4 1 6292
5'-3' exonuclease activity 5.7102E-3 6 6 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle