YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 12 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

small nuclear ribonucleoprotein complex 3.0635E-14 12 63 8 6292
ribonucleoprotein complex 1.0889E-11 12 514 11 6292
U2 snRNP 1.2331E-11 12 13 5 6292
nuclear part 8.0153E-10 12 1103 12 6292
macromolecular complex 9.1989E-8 12 1635 12 6292
nucleus 1.3278E-6 12 2041 12 6292
U5 snRNP 1.9071E-6 12 14 3 6292
organelle part 5.0851E-6 12 2282 12 6292
intracellular organelle part 5.0851E-6 12 2282 12 6292
U4/U6 x U5 tri-snRNP complex 2.5489E-5 12 32 3 6292
spliceosomal complex 7.191E-5 12 45 3 6292
membrane-bounded organelle 2.1329E-3 12 3771 12 6292
intracellular membrane-bounded organelle 2.1329E-3 12 3771 12 6292
intracellular organelle 5.3355E-3 12 4070 12 6292
organelle 5.3513E-3 12 4071 12 6292
nuclear cap binding complex 5.7116E-3 12 3 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear mRNA splicing, via spliceosome 9.8263E-20 12 99 11 6292
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 1.1039E-19 12 100 11 6292
RNA splicing, via transesterification reactions 2.4126E-19 12 107 11 6292
RNA splicing 2.6849E-18 12 132 11 6292
mRNA processing 1.7977E-17 12 156 11 6292
mRNA metabolic process 6.0458E-16 12 213 11 6292
RNA processing 3.8587E-13 12 380 11 6292
RNA metabolic process 9.5918E-9 12 954 11 6292
gene expression 2.393E-7 12 1283 11 6292
nucleic acid metabolic process 6.8885E-7 12 1415 11 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 2.0509E-6 12 1566 11 6292
spliceosome assembly 4.257E-6 12 18 3 6292
cellular nitrogen compound metabolic process 7.6146E-6 12 1770 11 6292
nitrogen compound metabolic process 8.6368E-6 12 1791 11 6292
ribonucleoprotein complex assembly 1.9376E-5 12 92 4 6292
cellular macromolecule metabolic process 1.144E-4 12 2285 11 6292
macromolecule metabolic process 1.5296E-4 12 2349 11 6292
cellular macromolecular complex assembly 2.7951E-4 12 182 4 6292
cellular macromolecular complex subunit organization 1.0688E-3 12 259 4 6292
primary metabolic process 1.3504E-3 12 2896 11 6292
macromolecular complex assembly 1.45E-3 12 281 4 6292
cellular metabolic process 2.1697E-3 12 3033 11 6292
metabolic process 3.2647E-3 12 3157 11 6292
macromolecular complex subunit organization 3.5046E-3 12 357 4 6292
ribonucleoprotein complex biogenesis 4.1497E-3 12 374 4 6292
cellular component assembly 4.6084E-3 12 385 4 6292
generation of catalytic spliceosome for first transesterification step 5.7116E-3 12 3 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA binding 1.3376E-9 12 367 9 6292
nucleic acid binding 2.5993E-7 12 666 9 6292
snRNA binding 3.3242E-5 12 5 2 6292
binding 7.7038E-5 12 1294 9 6292
U2 snRNA binding 1.9072E-3 12 1 1 6292
mRNA binding 1.916E-3 12 35 2 6292
U5 snRNA binding 3.811E-3 12 2 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle