| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.445934327547] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| DIM1 |
|
|
|
| TRM112 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nucleolus | 1.1194E-3 | 2 | 211 | 2 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| RNA modification | 1.2202E-4 | 2 | 70 | 2 | 6292 |
| ncRNA processing | 1.1624E-3 | 2 | 215 | 2 | 6292 |
| ncRNA metabolic process | 1.6621E-3 | 2 | 257 | 2 | 6292 |
| RNA processing | 3.6384E-3 | 2 | 380 | 2 | 6292 |
| tRNA methylation | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| rRNA modification | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| RNA methylation | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| N-methyltransferase activity | 1.5158E-5 | 2 | 25 | 2 | 6292 |
| RNA methyltransferase activity | 1.6421E-5 | 2 | 26 | 2 | 6292 |
| S-adenosylmethionine-dependent methyltransferase activity | 1.1171E-4 | 2 | 67 | 2 | 6292 |
| methyltransferase activity | 2.304E-4 | 2 | 96 | 2 | 6292 |
| transferase activity, transferring one-carbon groups | 2.4511E-4 | 2 | 99 | 2 | 6292 |
| rRNA (adenine-N6,N6-)-dimethyltransferase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| rRNA (adenine) methyltransferase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| tRNA (guanine-N2-)-methyltransferase activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| rRNA methyltransferase activity | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| zinc ion binding | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| tRNA (guanine) methyltransferase activity | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| tRNA methyltransferase activity | 5.3968E-3 | 2 | 17 | 1 | 6292 |
| transition metal ion binding | 7.6148E-3 | 2 | 24 | 1 | 6292 |