| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.099] [SVM Score: 0.451684876964] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
| integral to endoplasmic reticulum membrane | 9.8303E-3 | 2 | 31 | 1 | 6292 |
| intrinsic to endoplasmic reticulum membrane | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein amino acid glycosylation | 1.4021E-4 | 2 | 75 | 2 | 6292 |
| glycosylation | 1.4021E-4 | 2 | 75 | 2 | 6292 |
| macromolecule glycosylation | 1.4021E-4 | 2 | 75 | 2 | 6292 |
| glycoprotein biosynthetic process | 1.6371E-4 | 2 | 81 | 2 | 6292 |
| glycoprotein metabolic process | 1.7194E-4 | 2 | 83 | 2 | 6292 |
| calcium ion transport | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| cellular carbohydrate metabolic process | 1.7276E-3 | 2 | 262 | 2 | 6292 |
| carbohydrate metabolic process | 1.9877E-3 | 2 | 281 | 2 | 6292 |
| manganese ion transport | 2.224E-3 | 2 | 7 | 1 | 6292 |
| divalent metal ion transport | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| secretory pathway | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| protein modification process | 6.278E-3 | 2 | 499 | 2 | 6292 |
| macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| manganese-transporting ATPase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| calcium-transporting ATPase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| calcium ion transmembrane transporter activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| manganese ion transmembrane transporter activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| calcium ion binding | 2.224E-3 | 2 | 7 | 1 | 6292 |
| hydrolase activity, acting on acid anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
| pyrophosphatase activity | 3.1391E-3 | 2 | 353 | 2 | 6292 |
| ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| cation-transporting ATPase activity | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| transition metal ion transmembrane transporter activity | 8.8811E-3 | 2 | 28 | 1 | 6292 |
| ATPase activity, coupled to transmembrane movement of ions | 9.1975E-3 | 2 | 29 | 1 | 6292 |