| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.47163256739] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein phosphatase type 1 complex | 2.224E-3 | 2 | 7 | 1 | 6292 |
| protein serine/threonine phosphatase complex | 5.3968E-3 | 2 | 17 | 1 | 6292 |
| prospore membrane | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| intracellular immature spore | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| ascospore-type prospore | 6.0308E-3 | 2 | 19 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| regulation of phosphoprotein phosphatase activity | 1.5158E-7 | 2 | 3 | 2 | 6292 |
| regulation of dephosphorylation | 1.5158E-7 | 2 | 3 | 2 | 6292 |
| regulation of phosphatase activity | 1.5158E-7 | 2 | 3 | 2 | 6292 |
| regulation of hydrolase activity | 1.819E-6 | 2 | 9 | 2 | 6292 |
| regulation of phosphorus metabolic process | 3.552E-5 | 2 | 38 | 2 | 6292 |
| regulation of phosphate metabolic process | 3.552E-5 | 2 | 38 | 2 | 6292 |
| dephosphorylation | 3.9411E-5 | 2 | 40 | 2 | 6292 |
| regulation of catalytic activity | 4.7798E-5 | 2 | 44 | 2 | 6292 |
| regulation of molecular function | 4.7798E-5 | 2 | 44 | 2 | 6292 |
| phosphorus metabolic process | 1.3191E-3 | 2 | 229 | 2 | 6292 |
| phosphate metabolic process | 1.3191E-3 | 2 | 229 | 2 | 6292 |
| regulation of cellular metabolic process | 7.2445E-3 | 2 | 536 | 2 | 6292 |
| regulation of metabolic process | 7.5452E-3 | 2 | 547 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| phosphatase binding | 1.5158E-7 | 2 | 3 | 2 | 6292 |
| protein phosphatase binding | 1.5158E-7 | 2 | 3 | 2 | 6292 |
| protein phosphatase 1 binding | 1.5158E-7 | 2 | 3 | 2 | 6292 |
| protein phosphatase type 1 regulator activity | 3.3348E-6 | 2 | 12 | 2 | 6292 |
| enzyme binding | 4.5979E-6 | 2 | 14 | 2 | 6292 |
| phosphatase regulator activity | 1.2783E-5 | 2 | 23 | 2 | 6292 |
| protein phosphatase regulator activity | 1.2783E-5 | 2 | 23 | 2 | 6292 |
| enzyme regulator activity | 1.0773E-3 | 2 | 207 | 2 | 6292 |
| protein binding | 9.4468E-3 | 2 | 612 | 2 | 6292 |