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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.099] [SVM Score: 0.51082305702]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytoplasmic mRNA processing body 5.3053E-6 2 15 2 6292
ribonucleoprotein complex 6.6615E-3 2 514 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

mRNA catabolic process 1.1854E-4 2 69 2 6292
RNA catabolic process 1.5966E-4 2 80 2 6292
mRNA metabolic process 1.1408E-3 2 213 2 6292
cellular macromolecule catabolic process 1.7674E-3 2 265 2 6292
traversing start control point of mitotic cell cycle 1.9064E-3 2 6 1 6292
macromolecule catabolic process 2.1762E-3 2 294 2 6292
response to exogenous dsRNA 2.224E-3 2 7 1 6292
response to dsRNA 2.224E-3 2 7 1 6292
regulation of translational initiation 3.4937E-3 2 11 1 6292
deadenylation-dependent decapping of nuclear-transcribed mRNA 3.4937E-3 2 11 1 6292
cellular catabolic process 4.3405E-3 2 415 2 6292
karyogamy involved in conjugation with cellular fusion 5.7138E-3 2 18 1 6292
karyogamy 5.7138E-3 2 18 1 6292
catabolic process 6.2027E-3 2 496 2 6292
G1 phase of mitotic cell cycle 8.5646E-3 2 27 1 6292
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 8.5646E-3 2 27 1 6292
G1 phase 8.5646E-3 2 27 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

5'-3' exoribonuclease activity 6.3568E-4 2 2 1 6292
recombinase activity 1.2712E-3 2 4 1 6292
5'-3' exonuclease activity 1.9064E-3 2 6 1 6292
exoribonuclease activity 8.248E-3 2 26 1 6292
exoribonuclease activity, producing 5'-phosphomonoesters 8.248E-3 2 26 1 6292
deoxyribonuclease activity 9.1975E-3 2 29 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle