| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.51111629653] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| histone deacetylase complex | 1.2783E-5 | 2 | 23 | 2 | 6292 |
| chromatin remodeling complex | 2.4511E-4 | 2 | 99 | 2 | 6292 |
| nucleoplasm part | 1.5102E-3 | 2 | 245 | 2 | 6292 |
| nucleoplasm | 1.7541E-3 | 2 | 264 | 2 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| negative regulation of mitotic recombination | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| negative regulation of cellular process | 1.5726E-3 | 2 | 250 | 2 | 6292 |
| regulation of mitotic recombination | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| negative regulation of biological process | 1.6107E-3 | 2 | 253 | 2 | 6292 |
| negative regulation of meiosis | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| negative regulation of DNA recombination | 3.811E-3 | 2 | 12 | 1 | 6292 |
| regulation of DNA recombination | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| negative regulation of DNA metabolic process | 6.6645E-3 | 2 | 21 | 1 | 6292 |
| regulation of meiotic cell cycle | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| regulation of meiosis | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
| histone deacetylation | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| protein amino acid deacetylation | 9.1975E-3 | 2 | 29 | 1 | 6292 |
| regulation of DNA metabolic process | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| NAD-independent histone deacetylase activity | 1.0611E-6 | 2 | 7 | 2 | 6292 |
| NAD-dependent protein deacetylase activity | 1.819E-6 | 2 | 9 | 2 | 6292 |
| NAD-dependent histone deacetylase activity | 1.819E-6 | 2 | 9 | 2 | 6292 |
| histone deacetylase activity | 2.5061E-5 | 2 | 32 | 2 | 6292 |
| protein deacetylase activity | 2.5061E-5 | 2 | 32 | 2 | 6292 |
| deacetylase activity | 3.0063E-5 | 2 | 35 | 2 | 6292 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 5.6994E-5 | 2 | 48 | 2 | 6292 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 1.5966E-4 | 2 | 80 | 2 | 6292 |