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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.548786184254]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

vacuolar proton-transporting V-type ATPase, V0 domain 2.224E-3 2 7 1 6292
proton-transporting V-type ATPase, V0 domain 2.224E-3 2 7 1 6292
vacuolar proton-transporting V-type ATPase complex 4.7627E-3 2 15 1 6292
proton-transporting V-type ATPase complex 4.7627E-3 2 15 1 6292
proton-transporting two-sector ATPase complex, proton-transporting domain 6.0308E-3 2 19 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

regulation of pH 2.0514E-5 2 29 2 6292
monovalent inorganic cation homeostasis 3.552E-5 2 38 2 6292
cation homeostasis 2.974E-4 2 109 2 6292
chemical homeostasis 3.791E-4 2 123 2 6292
ion homeostasis 3.791E-4 2 123 2 6292
mannoprotein biosynthetic process 4.1283E-3 2 13 1 6292
mannoprotein metabolic process 4.1283E-3 2 13 1 6292
cell wall glycoprotein biosynthetic process 4.1283E-3 2 13 1 6292
cell wall mannoprotein biosynthetic process 4.1283E-3 2 13 1 6292
homeostatic process 4.1951E-3 2 408 2 6292
cell wall macromolecule biosynthetic process 6.9813E-3 2 22 1 6292
cellular component macromolecule biosynthetic process 6.9813E-3 2 22 1 6292
cellular cell wall macromolecule metabolic process 7.2981E-3 2 23 1 6292
proton transport 7.6148E-3 2 24 1 6292
cell wall macromolecule metabolic process 7.6148E-3 2 24 1 6292
pH reduction 7.6148E-3 2 24 1 6292
intracellular pH reduction 7.6148E-3 2 24 1 6292
vacuolar acidification 7.6148E-3 2 24 1 6292
hydrogen transport 7.6148E-3 2 24 1 6292
regulation of biological quality 7.6561E-3 2 551 2 6292
regulation of intracellular pH 7.9314E-3 2 25 1 6292
regulation of cellular pH 7.9314E-3 2 25 1 6292
monovalent inorganic cation transport 9.8303E-3 2 31 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ATPase activity, coupled to transmembrane movement of ions 2.0514E-5 2 29 2 6292
primary active transmembrane transporter activity 7.5032E-5 2 55 2 6292
P-P-bond-hydrolysis-driven transmembrane transporter activity 7.5032E-5 2 55 2 6292
ATPase activity, coupled to transmembrane movement of substances 7.5032E-5 2 55 2 6292
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 7.5032E-5 2 55 2 6292
ATPase activity, coupled to movement of substances 8.6451E-5 2 59 2 6292
active transmembrane transporter activity 3.6682E-4 2 121 2 6292
ion transmembrane transporter activity 5.3483E-4 2 146 2 6292
ATPase activity, coupled 5.5711E-4 2 149 2 6292
hydrogen-exporting ATPase activity, phosphorylative mechanism 6.3568E-4 2 2 1 6292
ATPase activity 1.1194E-3 2 211 2 6292
substrate-specific transmembrane transporter activity 1.7943E-3 2 267 2 6292
transmembrane transporter activity 2.3578E-3 2 306 2 6292
nucleoside-triphosphatase activity 2.7262E-3 2 329 2 6292
substrate-specific transporter activity 2.8436E-3 2 336 2 6292
hydrolase activity, acting on acid anhydrides 3.1391E-3 2 353 2 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 3.1391E-3 2 353 2 6292
pyrophosphatase activity 3.1391E-3 2 353 2 6292
transporter activity 4.1132E-3 2 404 2 6292
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism 4.4455E-3 2 14 1 6292

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