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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.549776591878]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
DFG5
  • anchored to plasma membrane
    		•
  • fungal-type cell wall biogenesis
  • pseudohyphal growth
  • budding cell bud growth
    		•
  • mannosidase activity
    		•
    RHO1
  • peroxisome
  • cellular bud tip
  • cellular bud neck
  • mitochondrion
  • mating projection tip
  • 1,3-beta-glucan synthase complex
  • mitochondrial outer membrane
    		•
  • small GTPase mediated signal transduction
  • regulation of cell size
  • cellular cell wall organization
  • actin filament organization
  • endocytosis
  • budding cell bud growth
    		•
  • GTPase activity
  • signal transducer activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    plasma membrane part 8.0641E-5 2 57 2 6292
    1,3-beta-glucan synthase complex 9.5344E-4 2 3 1 6292
    anchored to plasma membrane 1.2712E-3 2 4 1 6292
    anchored to membrane 1.2712E-3 2 4 1 6292
    plasma membrane 1.8077E-3 2 268 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    budding cell bud growth 2.8346E-5 2 34 2 6292
    asexual reproduction 2.0236E-4 2 90 2 6292
    cell budding 2.0236E-4 2 90 2 6292
    regulation of cell size 3.0847E-4 2 111 2 6292
    regulation of anatomical structure size 3.2544E-4 2 114 2 6292
    regulation of cellular component size 3.2544E-4 2 114 2 6292
    growth 5.275E-4 2 145 2 6292
    cell division 5.275E-4 2 145 2 6292
    cellular cell wall organization or biogenesis 1.0877E-3 2 208 2 6292
    cell wall organization or biogenesis 1.0877E-3 2 208 2 6292
    reproduction of a single-celled organism 1.1841E-3 2 217 2 6292
    reproduction 2.7096E-3 2 328 2 6292
    regulation of biological quality 7.6561E-3 2 551 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    mannosidase activity 1.2712E-3 2 4 1 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle