| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.552116093086] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| AVT6 |
|
|
|
| VBA1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| fungal-type vacuole membrane | 1.3647E-4 | 2 | 74 | 2 | 6292 |
| vacuolar membrane | 3.1973E-4 | 2 | 113 | 2 | 6292 |
| vacuolar part | 3.6682E-4 | 2 | 121 | 2 | 6292 |
| fungal-type vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
| lytic vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
| storage vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
| vacuole | 1.0983E-3 | 2 | 209 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| amino acid transport | 3.9411E-5 | 2 | 40 | 2 | 6292 |
| amine transport | 6.9626E-5 | 2 | 53 | 2 | 6292 |
| carboxylic acid transport | 8.6451E-5 | 2 | 59 | 2 | 6292 |
| organic acid transport | 8.9432E-5 | 2 | 60 | 2 | 6292 |
| epidermis development | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| ectoderm development | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| cell fate specification | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| tissue development | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| epidermal cell fate specification | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| epidermal cell differentiation | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| organ development | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| system development | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| multicellular organismal development | 2.859E-3 | 2 | 9 | 1 | 6292 |
| multicellular organismal process | 2.859E-3 | 2 | 9 | 1 | 6292 |
| basic amino acid transport | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| cell fate commitment | 7.2981E-3 | 2 | 23 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| amino acid transmembrane transporter activity | 2.5061E-5 | 2 | 32 | 2 | 6292 |
| amine transmembrane transporter activity | 4.3504E-5 | 2 | 42 | 2 | 6292 |
| carboxylic acid transmembrane transporter activity | 5.9419E-5 | 2 | 49 | 2 | 6292 |
| organic acid transmembrane transporter activity | 7.2304E-5 | 2 | 54 | 2 | 6292 |
| active transmembrane transporter activity | 3.6682E-4 | 2 | 121 | 2 | 6292 |
| L-aspartate transmembrane transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| acidic amino acid transmembrane transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| L-glutamate transmembrane transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
| basic amino acid transmembrane transporter activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
| transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
| substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
| L-amino acid transmembrane transporter activity | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |