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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.591817919344]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

establishment of ribosome localization 1.6421E-5 2 26 2 6292
ribosome localization 1.6421E-5 2 26 2 6292
ribosomal subunit export from nucleus 1.6421E-5 2 26 2 6292
establishment of organelle localization 7.5032E-5 2 55 2 6292
ribosomal large subunit biogenesis 1.051E-4 2 65 2 6292
organelle localization 1.8038E-4 2 85 2 6292
nuclear export 2.6542E-4 2 103 2 6292
nuclear transport 4.2367E-4 2 130 2 6292
nucleocytoplasmic transport 4.2367E-4 2 130 2 6292
ribosomal large subunit export from nucleus 2.859E-3 2 9 1 6292
ribosome biogenesis 3.0157E-3 2 346 2 6292
ribonucleoprotein complex biogenesis 3.5243E-3 2 374 2 6292
intracellular transport 7.7118E-3 2 553 2 6292
establishment of localization in cell 9.0494E-3 2 599 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

iron ion binding 2.224E-3 2 7 1 6292
transition metal ion binding 7.6148E-3 2 24 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle