| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.037] [SVM Score: 0.607286126226] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| ATG4 |
|
|
|
| NIP100 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| microtubule associated complex | 7.7306E-6 | 2 | 18 | 2 | 6292 |
| microtubule cytoskeleton | 2.8118E-4 | 2 | 106 | 2 | 6292 |
| cytoskeletal part | 1.0156E-3 | 2 | 201 | 2 | 6292 |
| cytoskeleton | 1.1732E-3 | 2 | 216 | 2 | 6292 |
| dynactin complex | 1.2712E-3 | 2 | 4 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| C-terminal protein lipidation | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| peptide or protein carboxyl-terminal blocking | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| establishment of spindle localization | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| establishment of spindle orientation | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| establishment of mitotic spindle localization | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| spindle localization | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| establishment of mitotic spindle orientation | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| microtubule binding | 2.2737E-6 | 2 | 10 | 2 | 6292 |
| tubulin binding | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| cytoskeletal protein binding | 8.6451E-5 | 2 | 59 | 2 | 6292 |
| cysteine-type endopeptidase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| protein binding | 9.4468E-3 | 2 | 612 | 2 | 6292 |