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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.616467691868]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

maturation of SSU-rRNA 8.6451E-5 2 59 2 6292
small-subunit processome assembly 3.1786E-4 2 1 1 6292
rRNA processing 4.1068E-4 2 128 2 6292
rRNA metabolic process 4.7071E-4 2 137 2 6292
ncRNA 5'-end processing 9.5344E-4 2 3 1 6292
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 9.5344E-4 2 3 1 6292
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 9.5344E-4 2 3 1 6292
rRNA 5'-end processing 9.5344E-4 2 3 1 6292
RNA 5'-end processing 9.5344E-4 2 3 1 6292
ncRNA processing 1.1624E-3 2 215 2 6292
maturation of 5.8S rRNA 1.2712E-3 2 4 1 6292
cleavage involved in rRNA processing 1.2712E-3 2 4 1 6292
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.2712E-3 2 4 1 6292
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.2712E-3 2 4 1 6292
endonucleolytic cleavage involved in rRNA processing 1.2712E-3 2 4 1 6292
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.2712E-3 2 4 1 6292
ncRNA metabolic process 1.6621E-3 2 257 2 6292
ribosome biogenesis 3.0157E-3 2 346 2 6292
ribonucleoprotein complex biogenesis 3.5243E-3 2 374 2 6292
RNA processing 3.6384E-3 2 380 2 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4.1283E-3 2 13 1 6292
ribosomal small subunit assembly 4.4455E-3 2 14 1 6292
ribosomal small subunit biogenesis 8.248E-3 2 26 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

snoRNA binding 2.3495E-5 2 31 2 6292
rRNA primary transcript binding 1.5888E-3 2 5 1 6292
RNA binding 3.3934E-3 2 367 2 6292
rRNA binding 5.0798E-3 2 16 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle